git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-3878 Use annotations from the representative sequence in the new alignment.
[jalview.git]
/
src
/
jalview
/
2021-12-01
Mateusz Warowny
JAL-3878 Use annotations from the representative sequen...
tree
|
commitdiff
2021-11-25
Mateusz Warowny
JAL-3878 Add jpred operation and worker to the services.
tree
|
commitdiff
2021-11-24
Mateusz Warowny
JAL-3878 Make openEditsParamsDialog an interface static...
tree
|
commitdiff
2021-11-23
Mateusz Warowny
JAL-3878 Add annotation operation and worker to the...
tree
|
commitdiff
2021-11-23
Mateusz Warowny
JAL-3878 Handle nulls when filtering annotation workers...
tree
|
commitdiff
2021-11-23
Mateusz Warowny
JAL-3878 Move common poll method to upper class Abstrac...
tree
|
commitdiff
2021-11-23
Mateusz Warowny
JAL-3878 Add methods to get and remove workers by their...
tree
|
commitdiff
2021-11-23
Mateusz Warowny
JAL-3878 Add getCalcName to AlignCalcWorkerI.
tree
|
commitdiff
2021-11-22
Mateusz Warowny
JAL-3878 Add multiple sequence operation.
tree
|
commitdiff
2021-11-22
Mateusz Warowny
JAL-3878 Create abstract workers and their utility...
tree
|
commitdiff
2021-11-22
Mateusz Warowny
JAL-3878 Create pollable task and executor it can be...
tree
|
commitdiff
2021-11-18
Mateusz Warowny
JAL-3878 Add ws menu builder and attach to the align...
tree
|
commitdiff
2021-11-18
Mateusz Warowny
JAL-3878 Add slivka's implementations of web service...
tree
|
commitdiff
2021-11-18
Mateusz Warowny
JAL-3878 Create backbone for new web services
tree
|
commitdiff
2021-11-18
Mateusz Warowny
JAL-3066 Remove redundant throws declaration from Slivk...
tree
|
commitdiff
2021-11-16
Mateusz Warowny
Merge branch 'JAL-3866_RNAalifold-slivka-client' into...
tree
|
commitdiff
2021-10-07
Mateusz Warowny
JAL-3899 Replace prints with logger messages.
alpha/JAL-3899_deuniquify_refactor
tree
|
commitdiff
2021-10-06
Mateusz Warowny
JAL-3899 Update usages of uniquify and deuniquify.
tree
|
commitdiff
2021-10-06
Mateusz Warowny
JAL-3899 Refactor sequence de/uniquification.
tree
|
commitdiff
2021-09-02
Mateusz Warowny
Add RNAalifold service instance to slivka web services.
JAL-3866_RNAalifold-slivka-client
tree
|
commitdiff
2021-07-29
Mateusz Warowny
Merge branch 'improvement/JAL-3848_slivka_0.8' into...
tree
|
commitdiff
2021-07-27
Mateusz Warowny
Merge branch 'bug/JAL-3807_jpred-with-slivka' into...
tree
|
commitdiff
2021-07-27
Mateusz Warowny
Merge commit '0b438477b16470202bddfecb54e0587036b37202...
tree
|
commitdiff
2021-07-27
Mateusz Warowny
JAL-3066 Fix NullPointerException thrown when showing...
tree
|
commitdiff
2021-07-25
Jim Procter
JAL-3854 patched SeqSeqUtils.deUniquify to not use...
improvement/JAL-3848_slivka_0.8
tree
|
commitdiff
2021-07-25
Jim Procter
JAL-3848 slivka preferences in javascript
tree
|
commitdiff
2021-07-25
Jim Procter
JAL-3848 reinstate Fetch DB References submenu
tree
|
commitdiff
2021-07-25
Jim Procter
JAL-3848 add compbio and jalview to direct connection...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3671 hardwire log4j.root logger to INFO to supress...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3848 enable slivka services dialog in JalviewJS
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3853 JAL-1870 toggle to enable/disable posterior...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3853 JAL-1870 patch tests for annotation colour...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3853 patch sequence annotation report code and...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3848 ensure annotation from a service gets a calcId...
tree
|
commitdiff
2021-07-22
Jim Procter
JAL-3848 don’t include sequence limits in sequence...
tree
|
commitdiff
2021-07-21
Mateusz Warowny
JAL-3848 print exception for failed align jobs
tree
|
commitdiff
2021-07-09
Mateusz Warowny
Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with...
bug/JAL-3807_jpred-with-slivka
tree
|
commitdiff
2021-07-09
Mateusz Warowny
JAL-3807 Fix SlivkaWSInstance not fetching alignments.
tree
|
commitdiff
2021-07-09
Mateusz Warowny
Merge branch 'bug/JAL-3849_aacon-parameters' into impro...
tree
|
commitdiff
2021-07-09
Mateusz Warowny
JAL-3690 Remove references to old AlignCalcManager.
bug/JAL-3849_aacon-parameters
tree
|
commitdiff
2021-07-08
Mateusz Warowny
JAL-3848 SlivkaParamSet: reformat code and add service...
tree
|
commitdiff
2021-07-08
Mateusz Warowny
JAL-3848 Update slivka client library.
tree
|
commitdiff
2021-07-08
Mateusz Warowny
JAL-3849 Remove join() which blocked the ui.
tree
|
commitdiff
2021-02-22
Mateusz Warowny
JAL-3807 - Add single sequence capabilities to jws2...
tree
|
commitdiff
2021-02-22
Mateusz Warowny
JAL-3807 - Move new JPred client to the jws2 package.
tree
|
commitdiff
2021-02-22
Mateusz Warowny
JAL-3807 - Re-implement results processing.
tree
|
commitdiff
2021-02-22
Mateusz
JAL-3807 JPred can now successfully submit and track...
tree
|
commitdiff
2021-02-22
Mateusz Warowny
Merge branch 'bug/JAL-3809_ws_params_dialog_fix' into...
tree
|
commitdiff
2021-02-22
Mateusz Warowny
Merge branch 'bug/JAL-3810_annotation_ws_stopping_abrup...
bug/JAL-3809_ws_params_dialog_fix
tree
|
commitdiff
2021-02-22
Mateusz Warowny
JAL-3809 - Fixed param edit dialog for jalviewjs.
tree
|
commitdiff
2021-02-22
Mateusz Warowny
Merge branch 'feature/JAL-3690_callback-based-web-servi...
tree
|
commitdiff
2021-02-22
Mateusz
Merge branch 'feature/JAL-3690_callback-based-web-servi...
tree
|
commitdiff
2021-02-05
Mateusz Warowny
JAL-3810 - Add trace method to javascript implementatio...
bug/JAL-3810_annotation_ws_stopping_abruptly
tree
|
commitdiff
2021-02-05
Mateusz Warowny
JAL-3810 - Replace log.trace() calls with log.debug()
tree
|
commitdiff
2021-01-27
Mateusz
JAL-3690 Introduce AlignCalcManager2 tests.
feature/JAL-3690_callback-based-web-services
tree
|
commitdiff
2021-01-22
Mateusz
JAL-3690 AlignCalcManager - add full support for onesho...
tree
|
commitdiff
2021-01-22
Mateusz
JAL-3690 AACon ws menu entry fix.
tree
|
commitdiff
2021-01-22
Mateusz
JAL-3690 Allow unregistered workers to be run with...
tree
|
commitdiff
2021-01-22
Mateusz
JAL-3690 Fix typo in enum name in slivka client.
tree
|
commitdiff
2021-01-22
Mateusz
JAL-3690 Fixed slivka wsmenu categories.
tree
|
commitdiff
2020-12-18
Jim Procter
JAL-3690 recoded AWSThread to use javax.swing.Timer...
merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services
tree
|
commitdiff
2020-12-17
Jim Procter
JAL-3690 patch out use of java.streams/spliterator...
tree
|
commitdiff
2020-12-15
Jim Procter
JAL-3690 patch out need for java.time in j2s (see https...
tree
|
commitdiff
2020-12-15
Jim Procter
JAL-3690 patch out spinning animation for web service...
tree
|
commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
|
commitdiff
2020-12-11
Mateusz
JAL-3690 Let's enable web services (seriously this...
tree
|
commitdiff
2020-11-27
Mateusz Waronwy
JAL-3690 List.copyOf() workaround
tree
|
commitdiff
2020-11-13
Mateusz Waronwy
JAL-3690 separate startup and poll code in SeqAnnotatio...
tree
|
commitdiff
2020-11-12
Mateusz Waronwy
JAL-3690 - fixed state inconsistency when restarting...
tree
|
commitdiff
2020-11-11
Mateusz Waronwy
JAL-3690 partially reworked AlignCalcManager
tree
|
commitdiff
2020-10-26
Mateusz Waronwy
JAL-3690 - introduce shutdown method that cleans up...
tree
|
commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Documentation for AlignCalcListener
tree
|
commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Catch and notify about worker cancellation...
tree
|
commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Fix concurrent modification exception when...
tree
|
commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Documentation for AlignCalcManagerI2
tree
|
commitdiff
2020-10-21
Mateusz Warowny
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager
tree
|
commitdiff
2020-07-22
Mateusz Warowny
JAL-3690 changed AWSThread to use Timer instead
tree
|
commitdiff
2020-07-20
Mateusz Warowny
JAL-3690 alternative servers menu fix
tree
|
commitdiff
2020-07-17
Mateusz Warowny
JAL-3690 restore jws1 JPred
tree
|
commitdiff
2020-07-16
Mateusz Warowny
JAL-3690 switching to CompletableFuture to allow chaining
tree
|
commitdiff
2020-07-15
Mateusz Warowny
JAL-3690 mark JalviewChangeSupport as deprecated
tree
|
commitdiff
2020-07-15
Mateusz Warowny
JAL-3690 refactoring web-services discovery
tree
|
commitdiff
2020-07-09
Mateusz Warowny
Merge branch 'feature/JAL-3686_slivka_client_js_update...
alpha/merge_212_JalviewJS_2112
tree
|
commitdiff
2020-07-09
Mateusz Warowny
Merge branch 'feature/JAL-3686_slivka_client_js_update...
tree
|
commitdiff
2020-07-08
Mateusz Warowny
JAL-3683 retrieve job status to output stream
feature/JAL-3686_slivka_client_js_update
tree
|
commitdiff
2020-07-08
Mateusz Warowny
JAL-6386 update slivka client for j2s compatibility
tree
|
commitdiff
2020-07-08
Mateusz Warowny
Merge branch 'feature/JAL-3515-slivka-preferences'...
tree
|
commitdiff
2020-06-30
gmungoc
JAL-3446 unused imports removed
tree
|
commitdiff
2020-06-30
gmungoc
JAL-3648 resize annotation panel after dragging to...
tree
|
commitdiff
2020-06-29
Jim Procter
JAL-3493 fix patch for 2.11.1_js (nb - these changes...
tree
|
commitdiff
2020-06-29
Jim Procter
JAL-3493 clear search highlights when escape/deselect all
tree
|
commitdiff
2020-06-18
BobHanson
JAL-3659 unnecessary duplication -- test is made in...
tree
|
commitdiff
2020-06-18
BobHanson
JAL-3446 unintentially left training message in code.
tree
|
commitdiff
2020-06-17
Jim Procter
JAL-3662 JAL-3660 JAL-3561 source formatting
tree
|
commitdiff
2020-06-17
Jim Procter
JAL-3660 JAL-3561 output alignment as requested file...
cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat
tree
|
commitdiff
2020-06-16
BobHanson
JAL-3659 proper headless check; skips setProperty for JS
tree
|
commitdiff
2020-06-16
BobHanson
JAL-3662 simple fix for CLI not using right format...
tree
|
commitdiff
2020-06-16
BobHanson
Merge branch 'Jalview-JS/develop' of https://source...
tree
|
commitdiff
2020-06-16
BobHanson
JAL-3446 -- YEIKS! two checkURLLinks calls!
tree
|
commitdiff
2020-06-16
gmungoc
Merge branch 'Jalview-JS/develop' of https://source...
tree
|
commitdiff
next