JAL-2480 suppress debug timing output that got left in
[jalview.git] / src / jalview /
2017-08-25 gmungocJAL-2480 suppress debug timing output that got left in
2017-08-23 gmungocJAL-2435 last lost commit e926a5d redone
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering...
2017-08-14 Jim ProcterJAL-2335 source formatting
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for...
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2663_filterAACons' into develop
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino...
2017-08-14 Jim ProcterJAL-2663 source formatting
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus...
2017-08-10 gmungocJAL-2505 apply changed description to new, not deleted...
2017-08-10 gmungocJAL-2658 ensure features dropdown entries are unique
2017-08-10 gmungocJAL-2593 don't filter out 'colour by label' features
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if...
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method...
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-09 gmungocJAL-2480 inline one method, improve comments
2017-08-09 Jim ProcterMerge branch 'bug/JAL-2634' into develop
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code)
2017-08-08 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet...
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti...
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop
2017-08-03 gmungocJAL-2643 updated threshold on threshold value focus...
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-03 gmungocJAL-2435 test for 'mirror font' option visible (not...
2017-08-02 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-01 Jim ProcterMerge branch 'bug/JAL-2632' into develop
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-01 gmungocJAL-2611 reinstate missed merge - again!
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop
2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview...
2017-07-31 kiramtJAL-2634 Make overview box full height when alignment... bug/JAL-2634
2017-07-31 gmungocJAL-2623 updated Overview/structure on input of thresho... bug/JAL-2630gradColourUpdateOverview
2017-07-31 kiramtJAL-2634 Added null test for graphics in AnnotationPane...
2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id...
2017-07-31 gmungocJAL-2623 JAL-2015 set Below Threshold on FeatureColour...
2017-07-31 gmungocJAL-2630 applet update overview on release of threshold...
2017-07-28 kiramtJAL-2632 Added paintAlignment(true) to show cols code
2017-07-28 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scroll...
2017-07-28 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from...
2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold...
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou...
2017-07-24 gmungocJAL-2624 additional tests for FeatureColour.getColour(),
2017-07-23 gmungocJAL-2481 JAL-2624 test for render feature below score...
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring...
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-18 kiramtJAL-2611 Tidies, initial unit tests
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi...
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment!
2017-07-18 kiramtJAL-2611 Better
2017-07-17 kiramtJAL-2611 Still not happy with behaviour
2017-07-14 kiramtJAL-2611 First pass, not thrilled with hidden column...
2017-07-14 kiramtMerge branch 'feature/JAL-2613' into feature/JAL-2611
2017-07-14 kiramtJAL-2611 Pre-merge checkin
2017-07-13 kiramtJAL-2611 Added overview dimensions test for position...
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew.
2017-07-12 kiramtJAL-2613 Centre alignment at click point
2017-07-06 gmungocJAL-1858 fast paint wrapped highlights unless view...
2017-07-06 gmungocJAL-1858 scrollToWrappedVisible preserve any horizontal...
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp...
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo...
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation
2017-07-05 gmungocJAL-1858 fastpaint highlights on wrapped alignment
2017-07-05 gmungocJAL-147 don't update overview for column selection...
2017-07-05 gmungocJAL-147 additions to unit test, check for negative...
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first...
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide...
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show...
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide...
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin...
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol...
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id...
2017-06-30 gmungocJAL-2505 correct handling of change of feature type
2017-06-30 gmungocJAL-2483 corrected finding feature groups
2017-06-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
next