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JAL-2480 suppress debug timing output that got left in
[jalview.git]
/
src
/
jalview
/
2017-08-25
gmungoc
JAL-2480 suppress debug timing output that got left in
tree
|
commitdiff
2017-08-23
gmungoc
JAL-2435 last lost commit e926a5d redone
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 choose appropriate alphabet for filtering...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 filterNonStandardResidues configurable for...
tree
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commitdiff
2017-08-14
Jim Procter
Merge branch 'patch/JAL-2663_filterAACons' into develop
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 flag and filter to exclude non-standard amino...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 source formatting
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-10
gmungoc
JAL-2660 used saved value of ignoreGapsInConsensus...
tree
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commitdiff
2017-08-10
gmungoc
JAL-2505 apply changed description to new, not deleted...
tree
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commitdiff
2017-08-10
gmungoc
JAL-2658 ensure features dropdown entries are unique
tree
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commitdiff
2017-08-10
gmungoc
JAL-2593 don't filter out 'colour by label' features
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 Rfam download suffix
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 JAL-1270 report Xfam download URL used if...
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 raw stockholm download URLs
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 remove overloaded getSequenceRecords method...
tree
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commitdiff
2017-08-09
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
gmungoc
JAL-2480 inline one method, improve comments
tree
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commitdiff
2017-08-09
Jim Procter
Merge branch 'bug/JAL-2634' into develop
tree
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commitdiff
2017-08-09
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
tree
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commitdiff
2017-08-09
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-08
gmungoc
JAL-2560 alternative fix (reinstate lost line of code)
tree
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commitdiff
2017-08-08
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-08
gmungoc
JAL-2649 JAL-2650 wait for Conservation calc to complet...
tree
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commitdiff
2017-08-08
gmungoc
JAL-2650 configure new viewport settings before selecti...
tree
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commitdiff
2017-08-07
Jim Procter
Merge branch 'bug/JAL-2592userDefinedScheme' into develop
tree
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commitdiff
2017-08-03
gmungoc
JAL-2643 updated threshold on threshold value focus...
tree
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commitdiff
2017-08-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-03
gmungoc
JAL-2435 test for 'mirror font' option visible (not...
tree
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commitdiff
2017-08-02
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-01
Jim Procter
Merge branch 'bug/JAL-2632' into develop
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-01
gmungoc
JAL-2611 reinstate missed merge - again!
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'feature/JAL-2611' into develop
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'bug/JAL-2630gradColourUpdateOverview...
tree
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commitdiff
2017-07-31
kiramt
JAL-2634 Make overview box full height when alignment...
bug/JAL-2634
tree
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commitdiff
2017-07-31
gmungoc
JAL-2623 updated Overview/structure on input of thresho...
bug/JAL-2630gradColourUpdateOverview
tree
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commitdiff
2017-07-31
kiramt
JAL-2634 Added null test for graphics in AnnotationPane...
tree
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commitdiff
2017-07-31
gmungoc
JAL-2622 don't vertical scroll wrapped alignment id...
tree
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commitdiff
2017-07-31
gmungoc
JAL-2623 JAL-2015 set Below Threshold on FeatureColour...
tree
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commitdiff
2017-07-31
gmungoc
JAL-2630 applet update overview on release of threshold...
tree
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commitdiff
2017-07-28
kiramt
JAL-2632 Added paintAlignment(true) to show cols code
tree
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commitdiff
2017-07-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-28
gmungoc
JAL-147 corrected status bar message for wrapped scroll...
tree
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commitdiff
2017-07-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-28
gmungoc
JAL-2622 no vertical scroll of wrapped alignment from...
tree
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commitdiff
2017-07-28
gmungoc
JAL-2006 squash rounding errors at min/max threshold...
tree
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commitdiff
2017-07-28
gmungoc
JAL-2630 update Overview/structure from graduated colou...
tree
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commitdiff
2017-07-24
gmungoc
JAL-2624 additional tests for FeatureColour.getColour(),
tree
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commitdiff
2017-07-23
gmungoc
JAL-2481 JAL-2624 test for render feature below score...
tree
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commitdiff
2017-07-23
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-22
gmungoc
JAL-2624 check feature colour threshold when colouring...
tree
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commitdiff
2017-07-22
gmungoc
JAL-2623 initialise colour threshold slider correctly
tree
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commitdiff
2017-07-22
kiramt
Merge branch 'develop' into feature/JAL-2611
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-18
kiramt
JAL-2611 Tidies, initial unit tests
tree
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commitdiff
2017-07-18
gmungoc
JAL-147 don't scroll up beyond startRes = 0
bug/JAL-147scrollWrappedView
tree
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commitdiff
2017-07-18
gmungoc
JAL-147 corrected calculation of vertical scroll positi...
tree
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commitdiff
2017-07-18
gmungoc
JAL-147 draw up to last position of wrapped alignment!
tree
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commitdiff
2017-07-18
kiramt
JAL-2611 Better
tree
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commitdiff
2017-07-17
kiramt
JAL-2611 Still not happy with behaviour
tree
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commitdiff
2017-07-14
kiramt
JAL-2611 First pass, not thrilled with hidden column...
tree
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commitdiff
2017-07-14
kiramt
Merge branch 'feature/JAL-2613' into feature/JAL-2611
tree
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commitdiff
2017-07-14
kiramt
JAL-2611 Pre-merge checkin
tree
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commitdiff
2017-07-13
kiramt
JAL-2611 Added overview dimensions test for position...
tree
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commitdiff
2017-07-13
kiramt
JAL-2613 Unit tests and a fix. Phew.
tree
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commitdiff
2017-07-12
kiramt
JAL-2613 Centre alignment at click point
tree
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commitdiff
2017-07-06
gmungoc
JAL-1858 fast paint wrapped highlights unless view...
tree
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commitdiff
2017-07-06
gmungoc
JAL-1858 scrollToWrappedVisible preserve any horizontal...
tree
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commitdiff
2017-07-06
gmungoc
JAL-147 prevent vertical Overview box movement in wrapp...
tree
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commitdiff
2017-07-06
gmungoc
JAL-147 unit test for hide/show sequences update Viewpo...
tree
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commitdiff
2017-07-06
gmungoc
JAL-2605 ensure correct scale width calculation
tree
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commitdiff
2017-07-05
gmungoc
JAL-1858 fastpaint highlights on wrapped alignment
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 don't update overview for column selection...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 revised update of startSeq, endSeq on unhide...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 unit tests added, unused setEndRes removed
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 corrected update of ViewportRanges for show...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 update ViewportRanges height after show/hide...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 remove redundant calls to update overview panel
tree
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commitdiff
2017-07-04
gmungoc
JAL-2608 tidy up OverviewPanel when closed
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 call method that sets visible width when drawin...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 extract local variable for ease of debugging
tree
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commitdiff
2017-07-03
gmungoc
Merge branch 'develop' into bug/JAL-147scrollWrappedView
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 correct width out-by-one drawing ids
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 don't scroll Overview box outside panel dimensions
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 ViewportRanges calculate wrapped vertical scrol...
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 don't draw ScalePanel when in wrapped mode
tree
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commitdiff
2017-07-03
gmungoc
JAL-2034 don't refresh Overview for selection in id...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2505 correct handling of change of feature type
tree
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commitdiff
2017-06-30
gmungoc
JAL-2483 corrected finding feature groups
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
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