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fixes bug 0013013 but reveals lack of a 'features retrieved' flag that should be...
[jalview.git]
/
src
/
jalview
/
2006-02-03
amwaterhouse
Max size is 100 for conservation
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commitdiff
2006-02-03
amwaterhouse
Retrieves PFAM alignments
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commitdiff
2006-02-03
amwaterhouse
Slightly bigger for Mac
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commitdiff
2006-02-03
amwaterhouse
Tooltip for multiple graph lines updated
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commitdiff
2006-02-03
amwaterhouse
set index of new annotation
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commitdiff
2006-02-03
amwaterhouse
Allow for non graph annotations in combobox
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commitdiff
2006-02-03
amwaterhouse
Reading features files readded as ref to FeatureRendere...
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commitdiff
2006-02-03
amwaterhouse
has ref to annotation
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commitdiff
2006-02-03
amwaterhouse
Add annotation with sequence ref updated
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commitdiff
2006-02-03
amwaterhouse
Reads annotation files
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commitdiff
2006-02-03
amwaterhouse
Applet draws line graphs
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commitdiff
2006-02-03
amwaterhouse
Applet reads in annotation files
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commitdiff
2006-01-30
amwaterhouse
Cancel button is now close button
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commitdiff
2006-01-30
amwaterhouse
Dont draw origin beyond end of alignment
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commitdiff
2006-01-30
amwaterhouse
No need for apply button, just update colours when...
tree
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commitdiff
2006-01-30
amwaterhouse
Get min and max colour added
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commitdiff
2006-01-30
amwaterhouse
Can be used for annotation colouring
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commitdiff
2006-01-30
amwaterhouse
Faster paint
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commitdiff
2006-01-30
amwaterhouse
Use Antialias flag
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commitdiff
2006-01-30
amwaterhouse
Smooth fonts added
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commitdiff
2006-01-30
amwaterhouse
Null sequence check
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commitdiff
2006-01-30
amwaterhouse
Monospaced indicator
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commitdiff
2006-01-30
amwaterhouse
Unix drag and drop implemented
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commitdiff
2006-01-30
amwaterhouse
GraphGroups added
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commitdiff
2006-01-30
amwaterhouse
Fast paint update
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commitdiff
2006-01-30
amwaterhouse
Anti alias flag
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commitdiff
2006-01-30
amwaterhouse
Drop annotations onto alignment
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commitdiff
2006-01-30
amwaterhouse
Smooth fonts, annotation Colour
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commitdiff
2006-01-30
amwaterhouse
Smooth font option
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commitdiff
2006-01-30
amwaterhouse
AddAnnotation with start index
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commitdiff
2006-01-30
amwaterhouse
New Class
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commitdiff
2006-01-30
amwaterhouse
New files
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commitdiff
2006-01-30
amwaterhouse
Faster painting
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commitdiff
2006-01-30
amwaterhouse
Allow features in overview window
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commitdiff
2006-01-30
amwaterhouse
Allow embedded applet
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commitdiff
2006-01-12
jprocter
PIR file IO now preserves and parses Modeller style...
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commitdiff
2006-01-12
jprocter
DBRefEntry made for sequences retrieved from the PDB
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commitdiff
2006-01-12
jprocter
<No Comment Entered>
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commitdiff
2006-01-12
jprocter
ensured properties are loaded before loggers are initia...
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commitdiff
2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
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commitdiff
2005-12-22
amwaterhouse
Check for null StringBuffer in getPDB
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commitdiff
2005-12-22
amwaterhouse
Check for null StringBuffer in getPDB
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commitdiff
2005-12-22
amwaterhouse
Reduced jar size by 20%
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commitdiff
2005-12-22
amwaterhouse
Allow embedded applet
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commitdiff
2005-12-22
amwaterhouse
graph now has type, not a boolean
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commitdiff
2005-12-22
amwaterhouse
Watch for trim left/right null widths
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commitdiff
2005-12-22
amwaterhouse
REGEX CANNOT BE STATIC
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commitdiff
2005-12-22
amwaterhouse
Wrapped search scrolls to visible result
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commitdiff
2005-12-22
amwaterhouse
Remove import
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commitdiff
2005-12-22
amwaterhouse
Annotations.Graph can be bargraph, linegraph
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commitdiff
2005-12-22
amwaterhouse
Remove printPoints
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commitdiff
2005-12-22
amwaterhouse
Remove main method
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commitdiff
2005-12-22
amwaterhouse
Load assocated tree
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commitdiff
2005-12-16
jprocter
Todo notes for feature issue: 0011711
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commitdiff
2005-12-15
amwaterhouse
Prevents confusing extra line being output in Java...
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commitdiff
2005-12-15
amwaterhouse
SetMenuBar(null) when closing frames. Prevents a bug...
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commitdiff
2005-12-12
amwaterhouse
GetAlignment uses active alignment window
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commitdiff
2005-12-12
amwaterhouse
Change dataset name
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commitdiff
2005-12-12
amwaterhouse
Change title
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commitdiff
2005-12-12
amwaterhouse
Jbinit
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commitdiff
2005-12-12
amwaterhouse
Font size label
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commitdiff
2005-12-12
amwaterhouse
Dont bother with WSWUBlast for now
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commitdiff
2005-12-12
amwaterhouse
FOnt size -3 for labels
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commitdiff
2005-12-12
amwaterhouse
Check if user cancelled before making image
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commitdiff
2005-12-12
amwaterhouse
Set font italic
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commitdiff
2005-12-12
amwaterhouse
Font changes on export png/eps
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commitdiff
2005-12-12
amwaterhouse
Getmask is slightly wider
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commitdiff
2005-12-09
jprocter
fixed pdbentry creation and multiple uniprot or pdb...
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commitdiff
2005-12-09
amwaterhouse
Change order of repaint if wrapped
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commitdiff
2005-12-09
amwaterhouse
Applet Structure viewer has all colours available
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commitdiff
2005-12-09
amwaterhouse
Can be used by PDBViewer
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commitdiff
2005-12-09
amwaterhouse
Only load the tree file once, for first alignment
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commitdiff
2005-12-09
amwaterhouse
Keylistener added to frame and seqcanvas
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commitdiff
2005-12-08
jprocter
context dependent title for when called from desktop...
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commitdiff
2005-12-08
amwaterhouse
If dataset seq exists for paste to existing alignment...
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commitdiff
2005-12-08
jprocter
added some error checking and instruction dialogs
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commitdiff
2005-12-08
amwaterhouse
Should call deselectAll when escape pressed
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commitdiff
2005-12-08
amwaterhouse
Dont repaint if component has been removed
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commitdiff
2005-12-08
jprocter
modified jnet parsing exception report string.
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commitdiff
2005-12-08
jprocter
exception checks for (de)uniquify
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commitdiff
2005-12-08
amwaterhouse
UnknownSequences.remove moved out of loop
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commitdiff
2005-12-08
amwaterhouse
showAnnotation state loaded
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commitdiff
2005-12-08
amwaterhouse
null pointer in wrapped mode, click near sequence
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commitdiff
2005-12-08
amwaterhouse
After merge
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commitdiff
2005-12-07
amwaterhouse
License added to new files
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commitdiff
2005-12-06
amwaterhouse
Slightly larger
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commitdiff
2005-12-06
amwaterhouse
Allow for DNA alignments in imgMap
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commitdiff
2005-12-06
amwaterhouse
Make ImageMap for features as well as groups
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commitdiff
2005-12-06
amwaterhouse
Add features to dataset
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commitdiff
2005-12-06
amwaterhouse
Add internalFrameActivated listener
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commitdiff
2005-12-06
amwaterhouse
hasDistances added
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commitdiff
2005-12-06
amwaterhouse
After merge
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commitdiff
2005-12-06
amwaterhouse
after merge
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commitdiff
2005-12-06
amwaterhouse
after merge
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commitdiff
2005-12-06
amwaterhouse
After merge
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commitdiff
2005-11-18
jprocter
Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...
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commitdiff
2005-11-18
jprocter
added 3 letter IUB codes for ambiguous residues/bases
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commitdiff
2005-10-07
amwaterhouse
comma separated rgb values
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commitdiff
2005-10-07
amwaterhouse
getalignment method added
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commitdiff
2005-10-07
amwaterhouse
Quick fix for reading sequence
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commitdiff
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