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need to own lock to notify
[jalview.git]
/
src
/
jalview
/
2010-09-23
jprocter
NPE race condition alert - see JAL-661
tree
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commitdiff
2010-09-23
jprocter
revised author list
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-09-22
jprocter
Fix and documentation for JAL-657
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commitdiff
2010-09-22
jprocter
jmol update
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commitdiff
2010-09-22
jprocter
jabaws, not jws2
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commitdiff
2010-09-22
jprocter
trap out of memory errors specifically associated with...
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commitdiff
2010-09-22
jprocter
ensure presets and parameters are discovered when servi...
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commitdiff
2010-09-20
jprocter
layout the menu with a minimum number of host labels
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commitdiff
2010-09-20
jprocter
more attempts to fix NPE from race condition
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commitdiff
2010-09-20
jprocter
only indicate that job is broken if it wasn't submitted...
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commitdiff
2010-09-20
jprocter
stop race condition when submenu being populated before...
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commitdiff
2010-09-20
jprocter
ensure host is shown for all non-host indexed submenus
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commitdiff
2010-09-19
jprocter
resolve pdb id/chain to pdb file/model number and chain
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commitdiff
2010-09-19
jprocter
name change for jaba
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commitdiff
2010-09-19
jprocter
cache the runner config so the preset list can be retri...
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commitdiff
2010-09-19
jprocter
progress bar and OOM/Exception traps for project marsha...
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commitdiff
2010-09-19
jprocter
catch case when a service has no parameters (or the...
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commitdiff
2010-09-19
jprocter
make sure only one sequence datasource initialization...
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commitdiff
2010-09-19
jprocter
hack to ensure that if window geometry was not stored...
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commitdiff
2010-09-19
jprocter
thread off sequence fetcher initialisation to make...
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commitdiff
2010-09-17
jprocter
show a save dialog box!
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commitdiff
2010-09-17
jprocter
poss fix for JAL-656
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commitdiff
2010-09-17
jprocter
make sure web service menu is always refreshed on 'OK'
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commitdiff
2010-09-16
jprocter
reflect the state of a failed Job in the GUI (e.g....
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commitdiff
2010-09-16
jprocter
patch to prevent NPE - which occurs if no features...
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commitdiff
2010-09-15
jprocter
added colour by label to feature type colourspec and...
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commitdiff
2010-09-15
jprocter
reinstated the splitpanes with better size placement...
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commitdiff
2010-09-14
jprocter
streamlined app and applet jmol console + event handlin...
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commitdiff
2010-09-13
jprocter
refactored to remove App reference in Applet (JAL-638)
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commitdiff
2010-09-13
jprocter
refactored to remove App reference in Applet (JAL-638)
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commitdiff
2010-09-13
jprocter
patched Jmol and code for embedding JmolAppConsole...
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commitdiff
2010-09-10
jprocter
jabaws, not jaba
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commitdiff
2010-09-10
jprocter
threaded off ws menu building to avoid initial pause...
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commitdiff
2010-09-10
jprocter
properly report invalid jobs (server doesn't support...
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commitdiff
2010-09-10
jprocter
early bail out for long urls, and threaded off group...
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commitdiff
2010-09-09
jprocter
wrap preset description tooltips
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commitdiff
2010-09-09
jprocter
remove duplicate host URLs in service list when not...
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commitdiff
2010-09-09
jprocter
wrap tooltips and revise layout (JAL-644)
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commitdiff
2010-09-09
jprocter
wrap tooltips
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commitdiff
2010-09-09
jprocter
tabbed panes for parameters and options.
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commitdiff
2010-09-08
jprocter
JAL-634 and JAL-635
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commitdiff
2010-09-08
jprocter
JAL-634
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commitdiff
2010-09-08
jprocter
todos & added simple method for other classes to monito...
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commitdiff
2010-09-08
jprocter
trap NPE possiblity for trees that have no associated...
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commitdiff
2010-09-07
jprocter
right click opens view URL popup for both parameters...
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commitdiff
2010-09-07
jprocter
fix for JAL-631
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commitdiff
2010-09-07
jprocter
debug warning / option dialog box display
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commitdiff
2010-09-07
jprocter
kick off the first time service parameter set discovery...
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commitdiff
2010-09-06
jprocter
JAL-591
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commitdiff
2010-09-06
jprocter
new XML representation for web services parameters
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commitdiff
2010-09-06
jprocter
pass user preset arguments to job
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
tree
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commitdiff
2010-09-03
jprocter
distinguish between userdefined parameter set job and...
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commitdiff
2010-09-03
jprocter
parameter set serialization/deserialization and preset...
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commitdiff
2010-09-02
jprocter
fix occasional arrayIndexOutOfBounds when sequences...
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commitdiff
2010-09-02
jprocter
debugged option changed logic and layout
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commitdiff
2010-09-02
jprocter
update gui in gui thread - not structure loading thread
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commitdiff
2010-09-02
jprocter
increment if strings *dont* match
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commitdiff
2010-09-02
jprocter
1.1 compatibility
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commitdiff
2010-09-02
jprocter
re-implemented user prefs logic - still need to debug...
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commitdiff
2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
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commitdiff
2010-08-31
jprocter
notes re JAL-629
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commitdiff
2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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commitdiff
2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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commitdiff
2010-08-31
jprocter
added URL display for parameters/options and debugged...
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commitdiff
2010-08-31
jprocter
utilities for cloning and manipulating JabaWS parameter...
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commitdiff
2010-08-27
jprocter
refactored seq/str binding methods and ensured that...
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commitdiff
2010-08-27
jprocter
patch for structures with multiple models, and refactor...
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commitdiff
2010-08-27
jprocter
1.2 compatibility
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commitdiff
2010-08-27
jprocter
revised sequence/structure binding so one structure...
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commitdiff
2010-08-27
jprocter
revised sequence/structure binding so one structure...
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commitdiff
2010-08-27
jprocter
patch re issues.jalview.org/browse/JAL-583 : hack to...
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commitdiff
2010-08-25
jprocter
init Jmol with 'SmarterJmolAdapter'
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commitdiff
2010-08-25
jprocter
correct initing of JmolViewer to avoid security excepti...
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commitdiff
2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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commitdiff
2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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commitdiff
2010-08-20
jprocter
avoid race condition by setting sequence logo flag...
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commitdiff
2010-08-20
jprocter
complete the sequence-structure mapping details. *...
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commitdiff
2010-08-20
jprocter
refactor jmol api so it doesn't clash with Swing compon...
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commitdiff
2010-08-20
jprocter
check that we have mappings before trying to broadcast...
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commitdiff
2010-08-20
jprocter
refactored external structure viewer binding API calls...
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commitdiff
2010-08-20
jprocter
wrapped code from URL retrieval tester as a function...
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commitdiff
2010-08-20
jprocter
improved debug output when Jmol viewer creation fails
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commitdiff
2010-08-20
jprocter
extend jmol binding handles selection events and add...
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commitdiff
2010-08-20
jprocter
binding between JalviewLite alignment windows and some...
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commitdiff
2010-08-18
jprocter
JAL-617 - new menu items for exporting current view...
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commitdiff
2010-08-18
jprocter
output the eigenvector matrix in full: JAL-616
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commitdiff
2010-08-18
jprocter
JAL-612 - catch hidden OOM related to filling in cut...
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commitdiff
2010-08-18
jprocter
1.5 annotation removal
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commitdiff
2010-08-18
jprocter
thread safe construction of Jmol instance and hack...
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commitdiff
2010-08-18
jprocter
refactor to abstract jmol/jalview binding and applet...
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commitdiff
2010-08-18
jprocter
code design comment
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commitdiff
2010-08-18
jprocter
1.5 annotation fix and thread safe menu update
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commitdiff
2010-08-18
jprocter
refactor to jalview.api methods
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commitdiff
2010-08-18
jprocter
1.5 annotation fix
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commitdiff
2010-08-18
jprocter
colour menu items are in same radiobutton group
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commitdiff
2010-08-13
jprocter
improved parameter set store/save/rename logic and...
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commitdiff
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