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new getVisibleContigs method mirrors the getVisibleContigs method in AlignmentView
[jalview.git]
/
src
/
jalview
/
2006-08-15
jprocter
first stage of adapting JNet client to hidden regions...
tree
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commitdiff
2006-08-15
jprocter
fixed alignment ordering name.
tree
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commitdiff
2006-08-15
jprocter
ensure that close widget is available for jobs that...
tree
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commitdiff
2006-08-15
amwaterhouse
Acknowledgement
tree
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commitdiff
2006-08-15
amwaterhouse
Setselectiongroup null on hide
tree
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commitdiff
2006-08-15
amwaterhouse
H key to hide / reveal
tree
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commitdiff
2006-08-15
amwaterhouse
Add key listener to scalePanel and annotationPanel
tree
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commitdiff
2006-08-15
amwaterhouse
Select revealed seqs
tree
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commitdiff
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
tree
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commitdiff
2006-08-15
amwaterhouse
Move features to dataset
tree
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser added
tree
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser
tree
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commitdiff
2006-08-14
jprocter
refactored to create generic polling thread and subjobs
tree
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commitdiff
2006-08-14
jprocter
function to indicate job has finished but no results...
tree
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commitdiff
2006-08-14
amwaterhouse
new feature added
tree
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commitdiff
2006-08-14
amwaterhouse
Stop loading must be before JOptionPane, 1.5 bug
tree
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commitdiff
2006-08-14
amwaterhouse
No need to check selection group size
tree
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commitdiff
2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
tree
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commitdiff
2006-08-14
amwaterhouse
Do a loop for multiple seq matches
tree
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commitdiff
2006-08-14
amwaterhouse
Correct test string
tree
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commitdiff
2006-08-14
jprocter
multiple subjobs can be cancelled and gui only allows...
tree
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commitdiff
2006-08-14
jprocter
fixed off by one bug in end sequence from getSubSequenc...
tree
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commitdiff
2006-08-14
amwaterhouse
findingFeatures flag set
tree
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commitdiff
2006-08-14
jprocter
end<start for empty sequences in Sequence[] from SeqCigar[]
tree
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commitdiff
2006-08-14
amwaterhouse
elementAt instead of get for 1.1 compatibility
tree
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commitdiff
2006-08-14
jprocter
fixing residue clip bug in MsaWSThread and adding minim...
tree
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commitdiff
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
tree
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commitdiff
2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
tree
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commitdiff
2006-08-11
amwaterhouse
Update overview on conservation/pid slider mouseRelease
tree
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commitdiff
2006-08-11
amwaterhouse
alignpanel.repaint
tree
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commitdiff
2006-08-11
amwaterhouse
Add links menu if no sequence is selected
tree
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commitdiff
2006-08-11
amwaterhouse
popup must be added to panel before showing
tree
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commitdiff
2006-08-11
amwaterhouse
param tree replaces treeFile
tree
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commitdiff
2006-08-11
amwaterhouse
Desktop is null if -noDisplay is set
tree
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commitdiff
2006-08-11
amwaterhouse
Make a new FeatureRenderer
tree
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commitdiff
2006-08-11
amwaterhouse
AlignPanel.repaint
tree
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commitdiff
2006-08-10
amwaterhouse
Smoother drawing
tree
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commitdiff
2006-08-10
amwaterhouse
Check selection size before making tree
tree
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commitdiff
2006-08-10
amwaterhouse
group.getSize should be ab.alignment.getGroups
tree
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commitdiff
2006-08-10
amwaterhouse
Check alAndColSel are not null
tree
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commitdiff
2006-08-10
amwaterhouse
Control and shift for col selection
tree
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commitdiff
2006-08-10
amwaterhouse
Reset button added
tree
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commitdiff
2006-08-10
amwaterhouse
Right mouse works with cursor mode
tree
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commitdiff
2006-08-10
amwaterhouse
Only add 1 feature settings table
tree
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commitdiff
2006-08-10
amwaterhouse
Comment out start and end refs
tree
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commitdiff
2006-08-10
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-10
amwaterhouse
file: is a URL
tree
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commitdiff
2006-08-10
amwaterhouse
Invert column selection
tree
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commitdiff
2006-08-09
jprocter
new SequenceI method for making a sub sequence from...
tree
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commitdiff
2006-08-09
jprocter
alignment from seqCigars will correctly mark deleted...
tree
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commitdiff
2006-08-09
jprocter
refactored hidden regions methods and made an Alignment...
tree
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commitdiff
2006-08-09
jprocter
fixed multiple shifts bug.
tree
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commitdiff
2006-08-09
amwaterhouse
Must save all the feature settings
tree
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commitdiff
2006-08-09
amwaterhouse
Check if groups have already been added or not
tree
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commitdiff
2006-08-09
amwaterhouse
Fix for local sources with no capabilities
tree
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commitdiff
2006-08-09
amwaterhouse
Icon drawing updated
tree
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commitdiff
2006-08-09
amwaterhouse
Null hidden cols check
tree
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commitdiff
2006-08-09
amwaterhouse
No need to re repaint
tree
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commitdiff
2006-08-09
amwaterhouse
Height and info message
tree
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commitdiff
2006-08-09
amwaterhouse
Transparency
tree
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commitdiff
2006-08-09
amwaterhouse
Endres check for wrap alignment
tree
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commitdiff
2006-08-09
amwaterhouse
Set the start res and start seq
tree
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commitdiff
2006-08-09
amwaterhouse
Copy hidden cols to new alignment
tree
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commitdiff
2006-08-09
amwaterhouse
Remove system.out
tree
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commitdiff
2006-08-09
amwaterhouse
Make sure link menu is displayed
tree
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commitdiff
2006-08-09
amwaterhouse
Save links and scores and keyValues for features
tree
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commitdiff
2006-08-09
amwaterhouse
KeyValue pairs for features
tree
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commitdiff
2006-08-08
amwaterhouse
Input Data...
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commitdiff
2006-08-08
amwaterhouse
Capitals
tree
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commitdiff
2006-08-08
amwaterhouse
Out by 1 error on show columns
tree
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commitdiff
2006-08-08
amwaterhouse
Applet has hidden regions
tree
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commitdiff
2006-08-08
jprocter
removed extraneous classes.
tree
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commitdiff
2006-08-08
jprocter
locally modified biojava-dasobert package is now org...
tree
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commitdiff
2006-08-07
amwaterhouse
Use idCanvas highlight system
tree
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commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-07
amwaterhouse
Use idCanvas highlight system
tree
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commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-07
amwaterhouse
Set wrapped mode even if false
tree
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commitdiff
2006-08-07
amwaterhouse
catch out of memory error for consensus when loading...
tree
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commitdiff
2006-08-07
jprocter
added commented out seqStrings comment.
tree
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commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
tree
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commitdiff
2006-07-28
amwaterhouse
Show reveal all menu
tree
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commitdiff
2006-07-28
amwaterhouse
findSeq in SeqPanel is used
tree
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commitdiff
2006-07-28
amwaterhouse
Resize image if id width changes
tree
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commitdiff
2006-07-28
amwaterhouse
No need for count
tree
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commitdiff
2006-07-28
amwaterhouse
Resize inactive when mouse exited and no dragEvent
tree
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commitdiff
2006-07-28
amwaterhouse
getIndex replaced with findSeq in seqPanel
tree
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commitdiff
2006-07-28
amwaterhouse
Remove system.out
tree
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commitdiff
2006-07-28
amwaterhouse
Scrolling fixed and selection in wrapped mode updated
tree
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commitdiff
2006-07-28
amwaterhouse
getIndex replaced by findSeq in Seqpanel
tree
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commitdiff
2006-07-28
amwaterhouse
Out by one error on reveal columns
tree
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commitdiff
2006-07-28
amwaterhouse
Check height of featurePanel, not this for mousepresses
tree
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commitdiff
2006-07-28
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-07-28
amwaterhouse
Applet doesnt have hidden columns
tree
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commitdiff
2006-07-28
amwaterhouse
Dont set all feature descriptions on status bar
tree
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commitdiff
2006-07-28
amwaterhouse
Dont draw all the panel if just a mouse movement
tree
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commitdiff
2006-07-28
amwaterhouse
If colour hasnt been created, make a new one
tree
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commitdiff
2006-07-28
amwaterhouse
Add transparency
tree
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commitdiff
2006-07-28
amwaterhouse
output source in gff file
tree
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commitdiff
2006-07-27
amwaterhouse
Send gapChar to print original Data
tree
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commitdiff
next
git://source.jalview.org / jalview.git / history