new getVisibleContigs method mirrors the getVisibleContigs method in AlignmentView
[jalview.git] / src / jalview /
2006-08-15 jprocterfirst stage of adapting JNet client to hidden regions...
2006-08-15 jprocterfixed alignment ordering name.
2006-08-15 jprocterensure that close widget is available for jobs that...
2006-08-15 amwaterhouseAcknowledgement
2006-08-15 amwaterhouseSetselectiongroup null on hide
2006-08-15 amwaterhouseH key to hide / reveal
2006-08-15 amwaterhouseAdd key listener to scalePanel and annotationPanel
2006-08-15 amwaterhouseSelect revealed seqs
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-15 amwaterhouseMove features to dataset
2006-08-14 amwaterhouseStockholm parser added
2006-08-14 amwaterhouseStockholm parser
2006-08-14 jprocterrefactored to create generic polling thread and subjobs
2006-08-14 jprocterfunction to indicate job has finished but no results...
2006-08-14 amwaterhousenew feature added
2006-08-14 amwaterhouseStop loading must be before JOptionPane, 1.5 bug
2006-08-14 amwaterhouseNo need to check selection group size
2006-08-14 amwaterhousefindSequenceMatch returns multiple sequences
2006-08-14 amwaterhouseDo a loop for multiple seq matches
2006-08-14 amwaterhouseCorrect test string
2006-08-14 jproctermultiple subjobs can be cancelled and gui only allows...
2006-08-14 jprocterfixed off by one bug in end sequence from getSubSequenc...
2006-08-14 amwaterhousefindingFeatures flag set
2006-08-14 jprocterend<start for empty sequences in Sequence[] from SeqCigar[]
2006-08-14 amwaterhouseelementAt instead of get for 1.1 compatibility
2006-08-14 jprocterfixing residue clip bug in MsaWSThread and adding minim...
2006-08-13 jprocterfixed end-residue bug and subjob panel names bug
2006-08-11 jproctermultiple web service jobs from visible blocks of an...
2006-08-11 amwaterhouseUpdate overview on conservation/pid slider mouseRelease
2006-08-11 amwaterhousealignpanel.repaint
2006-08-11 amwaterhouseAdd links menu if no sequence is selected
2006-08-11 amwaterhousepopup must be added to panel before showing
2006-08-11 amwaterhouseparam tree replaces treeFile
2006-08-11 amwaterhouseDesktop is null if -noDisplay is set
2006-08-11 amwaterhouseMake a new FeatureRenderer
2006-08-11 amwaterhouseAlignPanel.repaint
2006-08-10 amwaterhouseSmoother drawing
2006-08-10 amwaterhouseCheck selection size before making tree
2006-08-10 amwaterhousegroup.getSize should be ab.alignment.getGroups
2006-08-10 amwaterhouseCheck alAndColSel are not null
2006-08-10 amwaterhouseControl and shift for col selection
2006-08-10 amwaterhouseReset button added
2006-08-10 amwaterhouseRight mouse works with cursor mode
2006-08-10 amwaterhouseOnly add 1 feature settings table
2006-08-10 amwaterhouseComment out start and end refs
2006-08-10 amwaterhouse1.1 compatible
2006-08-10 amwaterhousefile: is a URL
2006-08-10 amwaterhouseInvert column selection
2006-08-09 jprocternew SequenceI method for making a sub sequence from...
2006-08-09 jprocteralignment from seqCigars will correctly mark deleted...
2006-08-09 jprocterrefactored hidden regions methods and made an Alignment...
2006-08-09 jprocterfixed multiple shifts bug.
2006-08-09 amwaterhouseMust save all the feature settings
2006-08-09 amwaterhouseCheck if groups have already been added or not
2006-08-09 amwaterhouseFix for local sources with no capabilities
2006-08-09 amwaterhouseIcon drawing updated
2006-08-09 amwaterhouseNull hidden cols check
2006-08-09 amwaterhouseNo need to re repaint
2006-08-09 amwaterhouseHeight and info message
2006-08-09 amwaterhouseTransparency
2006-08-09 amwaterhouseEndres check for wrap alignment
2006-08-09 amwaterhouseSet the start res and start seq
2006-08-09 amwaterhouseCopy hidden cols to new alignment
2006-08-09 amwaterhouseRemove system.out
2006-08-09 amwaterhouseMake sure link menu is displayed
2006-08-09 amwaterhouseSave links and scores and keyValues for features
2006-08-09 amwaterhouseKeyValue pairs for features
2006-08-08 amwaterhouseInput Data...
2006-08-08 amwaterhouseCapitals
2006-08-08 amwaterhouseOut by 1 error on show columns
2006-08-08 amwaterhouseApplet has hidden regions
2006-08-08 jprocterremoved extraneous classes.
2006-08-08 jprocterlocally modified biojava-dasobert package is now org...
2006-08-07 amwaterhouseUse idCanvas highlight system
2006-08-07 amwaterhouse1.1 compatible
2006-08-07 amwaterhouseUse idCanvas highlight system
2006-08-07 amwaterhouse1.1 compatible
2006-08-07 amwaterhouseSet wrapped mode even if false
2006-08-07 amwaterhousecatch out of memory error for consensus when loading...
2006-08-07 jprocteradded commented out seqStrings comment.
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-28 amwaterhouseShow reveal all menu
2006-07-28 amwaterhousefindSeq in SeqPanel is used
2006-07-28 amwaterhouseResize image if id width changes
2006-07-28 amwaterhouseNo need for count
2006-07-28 amwaterhouseResize inactive when mouse exited and no dragEvent
2006-07-28 amwaterhousegetIndex replaced with findSeq in seqPanel
2006-07-28 amwaterhouseRemove system.out
2006-07-28 amwaterhouseScrolling fixed and selection in wrapped mode updated
2006-07-28 amwaterhousegetIndex replaced by findSeq in Seqpanel
2006-07-28 amwaterhouseOut by one error on reveal columns
2006-07-28 amwaterhouseCheck height of featurePanel, not this for mousepresses
2006-07-28 amwaterhouse1.1 compatible
2006-07-28 amwaterhouseApplet doesnt have hidden columns
2006-07-28 amwaterhouseDont set all feature descriptions on status bar
2006-07-28 amwaterhouseDont draw all the panel if just a mouse movement
2006-07-28 amwaterhouseIf colour hasnt been created, make a new one
2006-07-28 amwaterhouseAdd transparency
2006-07-28 amwaterhouseoutput source in gff file
2006-07-27 amwaterhouseSend gapChar to print original Data
next