git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Merge branch 'develop' into develop_m2_8_1_2
[jalview.git]
/
src
/
jalview
/
2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
|
commitdiff
2013-06-13
Jim Procter
Merge branch 'JAL-1315_headlessEPS' into develop
tree
|
commitdiff
2013-06-13
Jim Procter
fix for JAL-1315
tree
|
commitdiff
2013-06-09
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
|
commitdiff
2013-06-09
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
tree
|
commitdiff
2013-06-09
Jim Procter
fix for JAL-1298
tree
|
commitdiff
2013-06-09
Jim Procter
JAL-715 - TODO
tree
|
commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
|
commitdiff
2013-06-07
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
tree
|
commitdiff
2013-06-07
Jim Procter
JAL-1309 fix broken partition computation for adding...
tree
|
commitdiff
2013-06-07
Jim Procter
JAL-945 uniquify prior to submission
tree
|
commitdiff
2013-06-07
Jim Procter
formatting
tree
|
commitdiff
2013-06-07
Jim Procter
JAL-715 allow headless construction for testing
tree
|
commitdiff
2013-06-07
Jim Procter
JAL-724 JAL-715 refactor and create new test for RSBS...
tree
|
commitdiff
2013-06-07
Jim Procter
fix for JAL-1246
tree
|
commitdiff
2013-06-07
Jim Procter
JAL-1307 patch to squash number format exceptions when...
tree
|
commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
|
commitdiff
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
tree
|
commitdiff
2013-05-31
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
|
commitdiff
2013-05-31
Jim Procter
JAL-1259 patch to avoid NPE
tree
|
commitdiff
2013-05-31
Jim Procter
JAL-1259 patch to avoid NPE
tree
|
commitdiff
2013-05-24
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1291 reinstate fastPaint flag manipulation to make...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1291 TODO: revised graphGroup model so grouped...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1291 - don't touch the graphics object until after...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1291 conditional output of rendering debugging...
tree
|
commitdiff
2013-05-24
Jim Procter
patch for JAL-1300 fixes JAL-1294: read and write COMBI...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1295 relaxed test for Annotation element equivalenc...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-381 Desktop.addInternalFrame cannot be called in...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1299 fix: ensure a new graphGroup is created if...
tree
|
commitdiff
2013-05-24
Jim Procter
fix for JAL-1297: COMBINE output now follows specificat...
tree
|
commitdiff
2013-05-24
Jim Procter
javadoc and formatting
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 sensible toString for benefi...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1070 - [ not a real patch ] - include offending...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-966 paintrefresher should be abstract [ Merge branc...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1161 conditional parameters for controlling clipping
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1292 avoid exception by using bitset of arbitrary...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1161 changed signature to allow clipping bounds...
tree
|
commitdiff
2013-05-24
Jim Procter
formatting
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1161 only trigger an annotation repaint in unwrappe...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1161 enable fastPaint for nudges from scroll bars...
tree
|
commitdiff
2013-05-24
Jim Procter
JAL-1161 stick to api
tree
|
commitdiff
2013-05-24
Jim Procter
typo
tree
|
commitdiff
2013-05-21
Jim Procter
JAL-674 ensure annotation is properly annotated
tree
|
commitdiff
2013-05-21
Jim Procter
JAL-1231 add chain ID
tree
|
commitdiff
2013-05-21
Jim Procter
JAL-1231 allow Jmol file handler to read from a stream
tree
|
commitdiff
2013-05-13
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
|
commitdiff
2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into Release_2_8_B...
tree
|
commitdiff
2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into develop
tree
|
commitdiff
2013-05-13
Jim Procter
JAL-1289 call oninit callback even if no alignment...
tree
|
commitdiff
2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
|
commitdiff
2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
tree
|
commitdiff
2013-02-14
Jim Procter
JAL-1140 reinstate the simpler version of parsing code...
tree
|
commitdiff
2013-02-14
Jim Procter
patch for bizarre ConcurrentModificationException that...
tree
|
commitdiff
2013-02-13
Jim Procter
Merge branch 'jims_annotate3d_update' into menard_final...
tree
|
commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
|
commitdiff
2013-02-13
jprocter
JAL-1216 switch to official release of VARNA 3.9
tree
|
commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
|
commitdiff
2013-02-11
jprocter
patch for 'This parser does not support specification...
tree
|
commitdiff
2013-02-11
jprocter
upgrade to latest paradise services model using JSon...
tree
|
commitdiff
2013-02-06
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
|
commitdiff
2013-02-06
jprocter
JAL-1265 basic support for parsing database accessions...
tree
|
commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
tree
|
commitdiff
2013-02-05
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
|
commitdiff
2013-02-05
jprocter
formatting
tree
|
commitdiff
2013-02-05
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
|
commitdiff
2013-01-20
jprocter
Merge branch 'Dbfetch_hotfix-JAL-1238' into develop
tree
|
commitdiff
2013-01-18
jprocter
JAL-1238 order to place primary sources before lower...
tree
|
commitdiff
2013-01-18
jprocter
JAL-1238 method to test if DAS source is a primary...
tree
|
commitdiff
2013-01-18
jprocter
JAL-1238 tier index indicating distance of a source...
tree
|
commitdiff
2013-01-18
jprocter
Merge branch 'JAL-1254-hotfix' into develop
tree
|
commitdiff
2013-01-18
jprocter
JAL-1255 don't show 'Right click to add annotations...
tree
|
commitdiff
2013-01-18
jprocter
JAL-1254 patch for NPE in annotation renderer when...
tree
|
commitdiff
2012-12-17
Natasha
test for output a file in Stockholm format
tree
|
commitdiff
2012-12-12
Natasha
Output accession number for file in stockholm format
tree
|
commitdiff
2012-12-11
jprocter
JAL-1217 check and avoid NPE if no datastore object...
tree
|
commitdiff
2012-12-11
jprocter
JAL-1217 report exception for service when no datastore...
tree
|
commitdiff
2012-12-07
jprocter
revised renderer and annotation model to support differ...
tree
|
commitdiff
2012-12-07
jprocter
convenience function to get the RNA model for an annota...
tree
|
commitdiff
2012-12-07
jprocter
use new secstructure process algorithm
tree
|
commitdiff
2012-12-07
jprocter
Anne's refined RNAML parser. Seems to have some bugs...
tree
|
commitdiff
2012-12-07
jprocter
Anne reinstated general stockholm parser code but exten...
tree
|
commitdiff
2012-12-07
jprocter
typing
tree
|
commitdiff
2012-12-07
jprocter
consensus secondary structure algorithm (possibly came...
tree
|
commitdiff
2012-12-07
jprocter
revised RNA stem/loop processing code that copes with...
tree
|
commitdiff
2012-12-07
jprocter
update authors for RNA processing routines
tree
|
commitdiff
2012-12-07
jprocter
menu for choosing between 'protein' and 'RNA' mode...
tree
|
commitdiff
2012-12-07
jprocter
formatting and error report cleanup
tree
|
commitdiff
2012-12-07
jprocter
gui hooks for contrafold and RNAfold services. commente...
tree
|
commitdiff
2012-12-07
jprocter
Exception signature change (will be overwritten by...
tree
|
commitdiff
2012-12-07
jprocter
formatting
tree
|
commitdiff
2012-12-07
jprocter
tidy import
tree
|
commitdiff
2012-12-07
jprocter
remove mentions of non-functional RNAInteraction colour...
tree
|
commitdiff
2012-12-07
jprocter
tidy debug messages
tree
|
commitdiff
2012-12-07
jprocter
proxy commit for Anne Menard <menard.annec@gmail.com...
tree
|
commitdiff
2012-12-04
jprocter
JAL-1140 - handled VARNA specific RNA exceptions within...
tree
|
commitdiff
2012-12-04
jprocter
JAL-1140 - handle VARNA specific RNA exceptions within...
tree
|
commitdiff
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
tree
|
commitdiff
2012-12-04
jprocter
JAL-1216 switch to official release of VARNA 3.9
tree
|
commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
|
commitdiff
next