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Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of https://source.jalview.org/git...
[jalview.git]
/
src
/
jalview
/
2018-11-26
gmungoc
JAL-3032 make JS properties conditional on Jalview...
tree
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commitdiff
2018-11-26
hansonr
adds swingjs.overflow.hidden client property
tree
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commitdiff
2018-11-19
gmungoc
JAL-3032 J2S variant for painting JTable
tree
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commitdiff
2018-11-19
gmungoc
JAL-3032 reinstate methods now available in SwingJS
tree
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commitdiff
2018-11-18
hansonr
adds JS hook for JTable repaint
tree
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commitdiff
2018-11-18
hansonr
BH - suggestion to turn off column dragging in Java...
tree
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commitdiff
2018-11-16
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2018-11-16
hansonr
fixing several GD# -- see green colors
tree
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commitdiff
2018-11-15
gmungoc
JAL-3063 remove commented code, suppress debug output
tree
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commitdiff
2018-11-15
gmungoc
JAL-3032 JAL-2344 project files are 'identifiable'
tree
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commitdiff
2018-11-14
gmungoc
JAL-3032 don't throw Exception to signal chain not...
tree
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commitdiff
2018-11-14
gmungoc
JAL-3152 holding patch for colour Jmol by sequence
tree
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commitdiff
2018-11-12
gmungoc
JAL-3076 JalviewJS requires lower case content-type...
tree
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commitdiff
2018-11-11
hansonr
adds explicit AJAX-allowed
tree
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commitdiff
2018-11-11
hansonr
adds static declaration of AJAX-readable domains
tree
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commitdiff
2018-11-08
gmungoc
JAL-3116 better unmarshalling of EMBL/Uniprot XML
tree
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commitdiff
2018-11-08
gmungoc
JAL-3048 use JalviewJS compatible JalviewFileChooser...
tree
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commitdiff
2018-11-08
gmungoc
JAL-3048 override showOpenDialog with JalviewJS compati...
tree
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commitdiff
2018-11-07
hansonr
JAL-3026-JAL-3063 JAXB unmarshaller fix
tree
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commitdiff
2018-11-07
hansonr
JAL-3026-JAL-3063 session test files
tree
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commitdiff
2018-11-06
hansonr
JAXB marshalling by JavaScript successfully unmarshalle...
tree
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commitdiff
2018-11-02
hansonr
Marshalling produces valid ZIP file. Unmarshalling...
tree
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commitdiff
2018-11-02
hansonr
JAXB update site + transpiler
tree
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commitdiff
2018-11-01
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into
tree
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commitdiff
2018-11-01
gmungoc
Merge branch 'feature/JAL-3144noJTree' into
tree
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commitdiff
2018-11-01
gmungoc
Merge branch 'Jalview-BH/JAL-3026' into
tree
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commitdiff
2018-11-01
gmungoc
JAL-3048 JAL-3056 reinstate save/load project, colour...
Jalview-BH/JAL-3026
tree
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commitdiff
2018-10-31
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into...
feature/JAL-3144noJTree
tree
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commitdiff
2018-10-31
gmungoc
Merge branch 'Jalview-BH/JAL-3026' into feature/JAL...
tree
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commitdiff
2018-10-31
gmungoc
JAL-3026 skip unsupported HttpURLConnection methods...
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 left aligned looks better (and works in Jalvie...
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 query URL corrected
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 close SequenceFetcher before opening PDB/Unipr...
tree
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commitdiff
2018-10-30
hansonr
JAL-3026-JAL-3063 adds binary ext to J2S
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 spelling, Javadoc, abstract method for JalviewJS
tree
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commitdiff
2018-10-30
gmungoc
Merge branch 'Jalview-BH/JAL-3026' into feature/JAL...
tree
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commitdiff
2018-10-29
gmungoc
JAL-3144 SequenceFetcher without JDatabaseTree
tree
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commitdiff
2018-10-29
gmungoc
JAL-3038 add ActionListener and FocusListener to SwingJ...
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
tree
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commitdiff
2018-10-17
hansonr
nonfunctional testing directory - just so I can see...
tree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
tree
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commitdiff
2018-09-24
gmungoc
JAL-3063 tidy commented out code
tree
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commitdiff
2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
tree
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commitdiff
2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
gmungoc
JAL-3113 override minimum frame size in a way that...
tree
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commitdiff
2018-09-11
gmungoc
JAL-3048 recoded edit View Name dialog for JalviewJS
tree
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commitdiff
2018-09-11
gmungoc
JAL-3056 offer New / Expand / Gather View in JalviewJS
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-09
Jim Procter
JAL-3106 normalise extension before checking if it...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 if selected file is null (On Java 10/OSX ...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 workaround: overload getSelectedFile() because...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3106 use .jvp as default
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3105 reallocate quality and consensus annotation...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3076ensemblGeneId' into develop
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov...
tree
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commitdiff
2018-09-05
Jim Procter
JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7...
bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'patch/VAqua_saveload_update_JAL-2988...
tree
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commitdiff
2018-09-03
gmungoc
Merge branch 'trialMerge' into releases/Release_2_10_5_...
tree
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commitdiff
2018-09-03
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
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commitdiff
2018-09-03
gmungoc
JAL-3079 drop use of clip region while drawing wrapped...
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception' into...
tree
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commitdiff
2018-09-03
Jim Procter
JAL-3076 clarify javadoc handling single sequence respo...
bug/JAL-3076ensemblGeneId
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-31
gmungoc
Merge branch 'bug/JAL-3003epsWithSelection' into trialMerge
tree
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commitdiff
2018-08-30
Jim Procter
JAL-3092 make sure base pair counter is always moved...
tree
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commitdiff
2018-08-30
gmungoc
Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
tree
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commitdiff
2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
tree
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commitdiff
2018-08-30
gmungoc
JAL-3079 don't create new Graphics to draw as it confus...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
tree
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commitdiff
2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3055 corrected logo drawing in JS
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
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