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JAL-2526 better names for fields
[jalview.git]
/
src
/
jalview
/
2017-05-12
kiramt
JAL-2491 Unit test updates
tree
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commitdiff
2017-05-12
kiramt
JAL-2491 Tweaks for applet
tree
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commitdiff
2017-05-11
kiramt
JAL-2491 First port to applet
tree
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commitdiff
2017-05-11
kiramt
JAL-2491 First port to applet
tree
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commitdiff
2017-05-11
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2509 JAL-2507 allow whitespace in GS annotation...
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2507 test if an annotation is ‘whitespace’
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp...
tree
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commitdiff
2017-05-11
kiramt
JAL-2491 Unit tests and updates
tree
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commitdiff
2017-05-10
kiramt
JAL-2491 Make it work with cursor movement
tree
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commitdiff
2017-05-10
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-10
kiramt
JAL-2522 Fix to cursor scrolling
tree
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commitdiff
2017-05-10
kiramt
JAL-2491 Cursor scrolling
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2509 extend set of brackets recognised by stockholm...
tree
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commitdiff
2017-05-09
tcofoegbu
JAL-2520 improvement to download and update structure...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 output secondary structure regardless of prese...
tree
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commitdiff
2017-05-09
kiramt
JAL-2491 Tidies and more refactoring
tree
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commitdiff
2017-05-09
kiramt
JAL-2491 Resolved highlighting and initialisation problems
tree
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commitdiff
2017-05-09
tcofoegbu
JAL-2465 fix to dynamically specify data source type...
tree
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commitdiff
2017-05-09
gmungoc
JAL-1632 correct i18n and NPE
tree
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commitdiff
2017-05-09
gmungoc
JAL-2480 include sequenceFeatureStore in createDatasetS...
tree
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commitdiff
2017-05-09
gmungoc
JAL-2483 JAL-2481 fixed findAllFeatures to handle null...
tree
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commitdiff
2017-05-09
kiramt
JAL-2388 Added checkbox to toggle hidden columns menu...
tree
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commitdiff
2017-05-09
gmungoc
JAL-2505 use constructors to set (what will be) final...
tree
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commitdiff
2017-05-08
gmungoc
JAL-2505 set type,desc,begin,end,group,score in Sequenc...
tree
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commitdiff
2017-05-08
gmungoc
JAL-2505 refactored SequenceFeature construction so...
tree
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commitdiff
2017-05-08
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-08
kiramt
JAL-2491 More wrap corrections
tree
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commitdiff
2017-05-08
gmungoc
JAL-1632 i18n for warning messages
tree
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commitdiff
2017-05-08
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2515'...
tree
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commitdiff
2017-05-08
kiramt
JAL-2491 Tweaks to avoid scroll problems at bottom...
tree
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commitdiff
2017-05-08
kiramt
JAL-2515 Id panel in applet updated for NPE on urlProvider
bug/JAL-2515
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 And applet
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 Fix to show non-gap positions in None colour...
tree
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commitdiff
2017-05-08
kiramt
JAL-2491 Started moving other scrolling fns into viewpo...
tree
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-05-05
gmungoc
JAL-964 JAL-2510 update Feature Settings from Amend...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
tcofoegbu
JAL-2484 adjusted default cache settings panel's left...
tree
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commitdiff
2017-05-05
kiramt
JAL-2491 Scrolling and interaction with overview/find...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-05
kiramt
JAL-2491 More working split panel + new scrolling
tree
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commitdiff
2017-05-04
tcofoegbu
JAL-1648 improvements: enter key closes the popup and...
tree
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commitdiff
2017-05-04
tcofoegbu
JAL-1648 resolved CR-JAL-41 review issues
tree
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commitdiff
2017-05-04
gmungoc
JAL-2506 allow graduated colour as default in new Seque...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2510 ensure modified feature type is displayed
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2504 allow feature type to be specified for Create...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-04
Jim Procter
fix for JAL-2509 - don’t replace all bracket types...
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-04
gmungoc
JAL-2505 delete and readd amended sequence feature
tree
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commitdiff
2017-05-04
gmungoc
JAL-2480 JAL-2505 guard against duplicating links
tree
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commitdiff
2017-05-04
Jim Procter
fix for JAL-2507 - resolve stockholm per residue annota...
tree
|
commitdiff
2017-05-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
|
commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
|
commitdiff
2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
features/JAL-2393customMatrices
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotat...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 AlignmentAnnotation.isQuantitative() test
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 Tidies
tree
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commitdiff
2017-05-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 Wrapped panel scrolling
tree
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commitdiff
2017-05-03
Jim Procter
Merge branch 'features/JAL-2432_annotbypercent' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
features/JAL-2432_annotbypercent
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 show occupancy in tooltip for row
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering value...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 applet: only enable percent checkbox when...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 percentage checkbox follows threshold value...
tree
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commitdiff
2017-05-03
gmungoc
JAL-2105 Ensembl REST now at 5.0
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 simplify code
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 sort of working overview/find interaction...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 inlined two 1-line methods
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-02
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-02
kiramt
JAL-2491 first addition of new event
tree
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commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2017-05-01
tcofoegbu
JAL-2482 bug fix
tree
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commitdiff
2017-05-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 missed commit for refactore renaming of getPdb...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
next