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(JAL-962) allow group visibility to be specified before features in those groups...
[jalview.git]
/
src
/
jalview
/
2011-10-21
jprocter
(JAL-962) allow group visibility to be specified before...
tree
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commitdiff
2011-10-03
jprocter
removed unnecessary parameters and changed alignment...
tree
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commitdiff
2011-09-27
jprocter
patch name, reference and URL for Multi-Harmony : JAL-724
tree
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commitdiff
2011-09-27
jprocter
ensure server errors return a URL and response document...
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commitdiff
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
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commitdiff
2011-09-27
jprocter
same overzeaolous logic (JAL-915)
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commitdiff
2011-09-27
jprocter
backout overzealous logic disabling feature links in...
tree
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commitdiff
2011-09-27
jprocter
NPE fix
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
tree
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commitdiff
2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
tree
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commitdiff
2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
tree
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commitdiff
2011-09-25
jprocter
organise imports
tree
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commitdiff
2011-09-25
jprocter
more focus fixing (JAL-943)
tree
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commitdiff
2011-09-25
jprocter
fix logic to ensure first check for news is correct...
tree
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commitdiff
2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
tree
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commitdiff
2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
tree
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commitdiff
2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
tree
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commitdiff
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
tree
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commitdiff
2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
tree
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commitdiff
2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
tree
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commitdiff
2011-09-16
jprocter
numerically ataxic comments.
tree
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commitdiff
2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
tree
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commitdiff
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
tree
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commitdiff
2011-09-16
jprocter
JAL-468 typo and label length in dialog
tree
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commitdiff
2011-09-16
jprocter
patch for JAL-935 - warning messages raised when alignm...
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commitdiff
2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
tree
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commitdiff
2011-09-15
jprocter
JAL-860 fixed grammar for one structure vs many structu...
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commitdiff
2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
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commitdiff
2011-09-14
jprocter
typo
tree
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commitdiff
2011-09-14
jprocter
JAL-234 - default button to reset min/max colours and...
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - standard label font functions
tree
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commitdiff
2011-09-14
jprocter
patch for NPE (not clear if NPE is evidence of deeper...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
fix for JAL-930
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
tree
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commitdiff
2011-08-30
jprocter
patch for JAL-731
tree
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commitdiff
2011-08-30
jprocter
patch for JAL-729 - NPE avoided and cut and paste impor...
tree
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commitdiff
2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
tree
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commitdiff
2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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commitdiff
2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 - conditional to hide the RSBS service editing...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 rsbs service editing
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commitdiff
2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
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commitdiff
2011-08-30
jprocter
JAL-715 store/reset .jalview_properties setting for...
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commitdiff
2011-08-30
jprocter
JAL-715 serialise and deserialise multiple rest client...
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commitdiff
2011-08-30
jprocter
JAL-715 - notify user of parsing problems for results...
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commitdiff
2011-08-30
jprocter
retrieve URL for datasource of packed set
tree
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commitdiff
2011-08-30
jprocter
ensure parsing errors and 'lack of data' errors are...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 need to URLencode constant values when serializ...
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commitdiff
2011-08-29
jprocter
JAL-715 - grammar for warning message.
tree
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commitdiff
2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
tree
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
tree
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commitdiff
2011-08-29
jprocter
JAL-633 simple concrete parameter and option objects...
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-25
jprocter
constructor only needs GUI container interface
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commitdiff
2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
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commitdiff
2011-08-25
jprocter
JAL-715 - better validation logic
tree
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commitdiff
2011-08-25
jprocter
debug dialog
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commitdiff
2011-08-25
jprocter
JAL-715 - prevent empty elements being generated
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commitdiff
2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
tree
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commitdiff
2011-08-24
jprocter
JAL-715 bugfixes and refactor of parsing code for use...
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commitdiff
2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
tree
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commitdiff
2011-08-23
jprocter
JAL-715 - simple tests and functions for IO of service...
tree
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commitdiff
2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
tree
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commitdiff
2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
tree
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commitdiff
2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
tree
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commitdiff
2011-08-18
jprocter
remove debug message
tree
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commitdiff
2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
tree
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commitdiff
2011-08-18
jprocter
minor efficiency refactor
tree
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commitdiff
2011-08-17
jprocter
JAL-853 use service action attribute to index services...
tree
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commitdiff
2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
tree
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commitdiff
2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
tree
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commitdiff
2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
tree
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commitdiff
2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
tree
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commitdiff
2011-08-15
jprocter
JAL-750 - automaticScrolling=true by default. Refactore...
tree
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commitdiff
2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
tree
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commitdiff
2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
tree
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commitdiff
2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
tree
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commitdiff
2011-08-05
jprocter
allow several progress bars on the desktop window ...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
fix NPE when applets stop. seems to make the simple...
tree
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commitdiff
2011-08-03
jprocter
refactor schema to group swing window geometry attributes
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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commitdiff
2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
tree
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commitdiff
2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
tree
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commitdiff
2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
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commitdiff
2011-07-22
jprocter
code style
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
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commitdiff
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