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Merge branch 'JAL-1164_disorderforselection' into Release_2_8_1_Branch
[jalview.git]
/
src
/
jalview
/
2013-06-13
Jim Procter
JAL-1314 allow 'nogui' and 'headless' as synonyms for...
tree
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commitdiff
2013-06-13
Jim Procter
fix for JAL-1315
tree
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commitdiff
2013-06-09
Jim Procter
fix for JAL-1298
tree
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commitdiff
2013-06-09
Jim Procter
JAL-715 - TODO
tree
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commitdiff
2013-06-07
Jim Procter
JAL-1309 fix broken partition computation for adding...
tree
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commitdiff
2013-06-07
Jim Procter
JAL-945 uniquify prior to submission
tree
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commitdiff
2013-06-07
Jim Procter
formatting
tree
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commitdiff
2013-06-07
Jim Procter
JAL-715 allow headless construction for testing
tree
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commitdiff
2013-06-07
Jim Procter
JAL-724 JAL-715 refactor and create new test for RSBS...
tree
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commitdiff
2013-06-07
Jim Procter
fix for JAL-1246
tree
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commitdiff
2013-06-07
Jim Procter
JAL-1307 patch to squash number format exceptions when...
tree
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commitdiff
2013-05-31
Jim Procter
JAL-1259 patch to avoid NPE
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 reinstate fastPaint flag manipulation to make...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 TODO: revised graphGroup model so grouped...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 - don't touch the graphics object until after...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 conditional output of rendering debugging...
tree
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commitdiff
2013-05-24
Jim Procter
patch for JAL-1300 fixes JAL-1294: read and write COMBI...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1295 relaxed test for Annotation element equivalenc...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-381 Desktop.addInternalFrame cannot be called in...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1299 fix: ensure a new graphGroup is created if...
tree
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commitdiff
2013-05-24
Jim Procter
fix for JAL-1297: COMBINE output now follows specificat...
tree
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commitdiff
2013-05-24
Jim Procter
javadoc and formatting
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 sensible toString for benefi...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1070 - [ not a real patch ] - include offending...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-966 paintrefresher should be abstract [ Merge branc...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 conditional parameters for controlling clipping
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1292 avoid exception by using bitset of arbitrary...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 changed signature to allow clipping bounds...
tree
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commitdiff
2013-05-24
Jim Procter
formatting
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 only trigger an annotation repaint in unwrappe...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 enable fastPaint for nudges from scroll bars...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 stick to api
tree
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commitdiff
2013-05-24
Jim Procter
typo
tree
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commitdiff
2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into Release_2_8_B...
tree
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commitdiff
2013-05-13
Jim Procter
JAL-1289 call oninit callback even if no alignment...
tree
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commitdiff
2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
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commitdiff
2013-02-06
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
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commitdiff
2013-02-06
jprocter
JAL-1265 basic support for parsing database accessions...
tree
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commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
tree
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commitdiff
2013-02-05
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
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commitdiff
2013-02-05
jprocter
formatting
tree
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commitdiff
2013-02-05
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
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commitdiff
2013-01-18
jprocter
JAL-1238 order to place primary sources before lower...
tree
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commitdiff
2013-01-18
jprocter
JAL-1238 method to test if DAS source is a primary...
tree
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commitdiff
2013-01-18
jprocter
JAL-1238 tier index indicating distance of a source...
tree
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commitdiff
2013-01-18
jprocter
JAL-1255 don't show 'Right click to add annotations...
tree
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commitdiff
2013-01-18
jprocter
JAL-1254 patch for NPE in annotation renderer when...
tree
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commitdiff
2012-12-17
Natasha
test for output a file in Stockholm format
tree
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commitdiff
2012-12-12
Natasha
Output accession number for file in stockholm format
tree
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commitdiff
2012-12-11
jprocter
JAL-1217 check and avoid NPE if no datastore object...
tree
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commitdiff
2012-12-11
jprocter
JAL-1217 report exception for service when no datastore...
tree
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commitdiff
2012-11-23
Natasha
stockholm file output code developed by Natasha Sherstneva
tree
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commitdiff
2012-11-15
Paolo Di Tommaso
Fixed T-Coffee file scores parser to support extended...
tree
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commitdiff
2012-11-09
jprocter
constructor takes settings from any existing feature...
tree
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commitdiff
2012-11-08
jprocter
JAL-1193 ensure the 'loadedComplete' method gets called...
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-11-07
jprocter
JAL-957 manual update to applet authorlist - need to...
tree
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commitdiff
2012-10-24
jprocter
JAL-1193 call setLoadingFromArchiveFinished(true) for...
tree
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commitdiff
2012-10-24
jprocter
JAL-1193 patch prevents JalviewJmolBinding from handlin...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-04
jprocter
Merge branch 'develop' into Release_2_8_Branch
tree
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commitdiff
2012-10-04
jprocter
JAL-636 switch to simple REST interface to dbfetch...
tree
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commitdiff
2012-10-04
jprocter
avoid importing the mapping every time we parse a unipr...
tree
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commitdiff
2012-10-04
jprocter
JAL-636 tweak main() based test to allow DAS sources...
tree
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commitdiff
2012-10-04
jprocter
JAL-1188 - set the user agent to Jalview Desktop/$...
tree
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commitdiff
2012-10-04
jprocter
JAL-1064 JAL-671 make sure all buttons are disabled...
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-10-03
jprocter
JAL-1026 - insert a sensible default for proxy so Jalvi...
tree
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commitdiff
2012-10-03
jprocter
JAL-1183 JAL-343 - use dialog queue for JABA warning...
tree
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commitdiff
2012-10-02
jprocter
JAL-1185 patch NPE - create new group for subtree on...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1137 messy hardcoding of author list to...
tree
|
commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1139 hardcode preferred height to logo...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 more robust loading code and different logos...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog thread is only started after the splash...
tree
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commitdiff
2012-10-01
jprocter
JAL-1111 dialog flickers whilst example file starts...
tree
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commitdiff
2012-10-01
jprocter
JAL-1184 apparent deadlock when launching jalview on...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 use dialog queue for usage statistics prompt
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog queue
tree
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commitdiff
2012-09-27
jprocter
JAL-1030 patch typo
tree
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commitdiff
2012-09-27
jprocter
JAL-1179 - regression from JAL-1030 patch implicitly...
tree
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commitdiff
2012-09-25
jprocter
JAL-1031 allow empty selections to pass through to...
tree
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commitdiff
2012-09-25
jprocter
JAL-1179 note and patch for exceptions raised when...
tree
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commitdiff
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
tree
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commitdiff
2012-09-25
jprocter
JAL-1010 write validated value back to text field to...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 - trap redraw buffer OOM errors. needs a test...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
tree
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commitdiff
2012-09-24
jprocter
formatting
tree
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commitdiff
2012-09-24
jprocter
JAL-958 normalise logo menu options in applet
tree
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commitdiff
2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
tree
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commitdiff
2012-09-21
jprocter
JAL-849 try harder and wait for longer for JABAWS to...
tree
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commitdiff
2012-09-21
jprocter
JAL-1171 refactor code to allow gui update for global...
tree
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commitdiff
2012-09-21
jprocter
JAL-1165 visual delay whilst results are processed.
tree
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commitdiff
2012-09-21
jprocter
JAL-1165 allow progress indicators on the web service...
tree
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commitdiff
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