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New WSWUBlast Client files
[jalview.git]
/
src
/
jalview
/
2005-11-18
amwaterhouse
Add PDB accession to new sequence
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commitdiff
2005-11-18
amwaterhouse
Allow single line BLC files
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commitdiff
2005-11-18
amwaterhouse
Allow for 1 line BLC files
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2005-11-18
amwaterhouse
Parse name from last index of /
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2005-11-18
amwaterhouse
Use full name in dataset creation
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commitdiff
2005-11-18
amwaterhouse
Show error message outside thread loop
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commitdiff
2005-11-17
amwaterhouse
Hidden tabs and vamsas refs for beta release
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commitdiff
2005-11-17
amwaterhouse
Graphics must be set from nullFrame
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2005-11-17
amwaterhouse
No more isOverview
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commitdiff
2005-11-17
amwaterhouse
If overview is visible, update it
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commitdiff
2005-11-17
amwaterhouse
no more show translation
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commitdiff
2005-11-17
amwaterhouse
Hide Tab settings for build
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commitdiff
2005-11-17
amwaterhouse
Use setRGB rather than color, fillrect
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commitdiff
2005-11-17
amwaterhouse
Move start and end before parsing name
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commitdiff
2005-11-17
amwaterhouse
Hide vamsas settings for build
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commitdiff
2005-11-17
amwaterhouse
Now outputs features and groups, and wrapped alignment...
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commitdiff
2005-11-17
amwaterhouse
Optimized Overview
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commitdiff
2005-11-17
amwaterhouse
Use stringbuffer, not string+
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commitdiff
2005-11-16
amwaterhouse
Don't initialise a char in findIndex
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commitdiff
2005-11-16
amwaterhouse
Don't set chain colours in hashtable
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commitdiff
2005-11-16
amwaterhouse
Highlight from alignment
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commitdiff
2005-11-15
amwaterhouse
Dont use this yet
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commitdiff
2005-11-15
amwaterhouse
Dont use myGraphics
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commitdiff
2005-11-15
amwaterhouse
Removed
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commitdiff
2005-11-15
amwaterhouse
Graphical bits moved into files to save jar size
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commitdiff
2005-11-15
amwaterhouse
Removed to reduce jar size
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commitdiff
2005-11-14
amwaterhouse
Modifications for Applet PDB viewer
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commitdiff
2005-11-14
amwaterhouse
Add getAlignment function
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commitdiff
2005-11-14
amwaterhouse
Catch exceptions
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commitdiff
2005-11-14
amwaterhouse
Use shortname
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2005-11-14
amwaterhouse
getShortName
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commitdiff
2005-11-14
amwaterhouse
findByShortName
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commitdiff
2005-11-11
amwaterhouse
No new PDBViewer
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commitdiff
2005-11-11
amwaterhouse
Last chance, is the sequence without id?
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commitdiff
2005-11-11
amwaterhouse
SequenceFetcher new class
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commitdiff
2005-11-11
amwaterhouse
AddPdbEntry added
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commitdiff
2005-11-11
amwaterhouse
PNG and EPS in ImageMaker
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commitdiff
2005-11-10
amwaterhouse
Allow featuresettings to be enabled on load
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commitdiff
2005-11-10
amwaterhouse
REmove system.out
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commitdiff
2005-11-10
amwaterhouse
AlignSeq takes printstream as arg
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commitdiff
2005-11-10
amwaterhouse
OnlyAddPDBEntries
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commitdiff
2005-11-10
amwaterhouse
Set PDBViewer
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commitdiff
2005-11-10
amwaterhouse
Use Antialiasing
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commitdiff
2005-11-10
amwaterhouse
PDB implementation updated
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commitdiff
2005-11-10
amwaterhouse
If selectionGroup is null, return
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commitdiff
2005-11-10
amwaterhouse
Return accurate RGB for transparent residues
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commitdiff
2005-11-10
amwaterhouse
Make cancelled public variable
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commitdiff
2005-11-10
amwaterhouse
getDbRef
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commitdiff
2005-11-10
amwaterhouse
Get and set PDBEntrys
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commitdiff
2005-11-10
amwaterhouse
PDB is now PDBEntry
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commitdiff
2005-11-10
amwaterhouse
Use StringBUffer instead of String
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commitdiff
2005-11-10
amwaterhouse
PDM mapping
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commitdiff
2005-11-08
amwaterhouse
Preliminary storeJalview
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commitdiff
2005-11-08
amwaterhouse
getVersion added for Castor mapping
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commitdiff
2005-11-04
amwaterhouse
Id parsing moved to Sequence
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commitdiff
2005-11-04
amwaterhouse
REmove system.out
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commitdiff
2005-11-04
amwaterhouse
Show full id
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commitdiff
2005-11-04
amwaterhouse
Display full id in trees
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commitdiff
2005-11-04
amwaterhouse
Use visible id for sorting
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commitdiff
2005-11-02
amwaterhouse
Load and save Feature Colour Settings
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commitdiff
2005-11-02
amwaterhouse
Java 1.5 bug note
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commitdiff
2005-11-02
amwaterhouse
Allow residue prefix to dataset
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commitdiff
2005-11-02
amwaterhouse
Only add first Id to suggestedIds
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commitdiff
2005-11-02
amwaterhouse
Add jvsuffix and dbref to menu
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commitdiff
2005-11-02
amwaterhouse
2CdbPrefix true by default
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commitdiff
2005-11-02
amwaterhouse
Output jvsuffix, dbref
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commitdiff
2005-11-01
amwaterhouse
Inform user about visual alignment, not dataset updates
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commitdiff
2005-11-01
amwaterhouse
Wrap long description in table
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commitdiff
2005-11-01
jprocter
dataset reference propagated to new MsaWS alignment.
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commitdiff
2005-11-01
jprocter
stores reference to dataset sequence if present
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commitdiff
2005-11-01
amwaterhouse
Label changes
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commitdiff
2005-11-01
amwaterhouse
Show JVSuffix
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commitdiff
2005-11-01
amwaterhouse
disulfide bond exceptions
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commitdiff
2005-11-01
jprocter
trivial change ("" to new String() in static method)
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commitdiff
2005-11-01
amwaterhouse
Adjust seq limits for visual and dataset sequences
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commitdiff
2005-10-31
amwaterhouse
dbPrefix and jvsuffix added
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commitdiff
2005-10-31
amwaterhouse
getDisplayId changed
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commitdiff
2005-10-31
amwaterhouse
jalviewClipboard added
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commitdiff
2005-10-31
amwaterhouse
Display only selected features
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commitdiff
2005-10-31
amwaterhouse
DBPrefix and JVSuffix added
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commitdiff
2005-10-31
amwaterhouse
FeatureRenderer doenst use groups
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commitdiff
2005-10-31
amwaterhouse
Sequence.getDatasetSequence().getFeatures
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commitdiff
2005-10-31
amwaterhouse
Use fontmetrics to tidy up display
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commitdiff
2005-10-31
amwaterhouse
Prompt before blasting
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commitdiff
2005-10-31
amwaterhouse
equalsIgnoreCase CLUSTAL
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commitdiff
2005-10-31
amwaterhouse
Catch numberformatexceptions
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commitdiff
2005-10-31
amwaterhouse
Accession and name unbounded
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commitdiff
2005-10-31
amwaterhouse
DisplayId can be dbref and or jvsuffix
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commitdiff
2005-10-31
amwaterhouse
Find by displayid not used
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commitdiff
2005-10-27
jprocter
fixed exception thrown when msa web service is applied...
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commitdiff
2005-10-27
amwaterhouse
Disable featuresettings
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commitdiff
2005-10-27
amwaterhouse
Moved vector features
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commitdiff
2005-10-27
amwaterhouse
Allow old style groups file
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commitdiff
2005-10-27
amwaterhouse
Remove system.out
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commitdiff
2005-10-27
amwaterhouse
Remove static refs to applet
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commitdiff
2005-10-27
amwaterhouse
MyGraphics added to enhance applet GUI
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commitdiff
2005-10-26
amwaterhouse
Groups file is now feature file
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commitdiff
2005-10-26
amwaterhouse
Parsing updates
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commitdiff
2005-10-26
amwaterhouse
vamsasDemo new branch
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commitdiff
2005-10-07
amwaterhouse
comma separated rgb values
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commitdiff
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