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JAL-3850 using reflection for SimpleHttpFileServerFactory
[jalview.git]
/
src
/
jalview
/
2020-03-16
gmungoc
JAL-3551 the correct PyMOL colour by chain command
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
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commitdiff
2020-03-09
gmungoc
JAL-3549 JAL-3305 no Sort By Score / Density if no...
tree
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commitdiff
2020-03-09
gmungoc
JAL-3412 update layout whenever desired id width changes
testbuild/JAL-3412_getIdWidth_test
tree
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commitdiff
2020-03-06
gmungoc
JAL-3187 unit test for findComplementFeaturesAtResidue
tree
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commitdiff
2020-03-06
gmungoc
Merge branch 'feature/JAL-3468featureDescriptionEllipsi...
tree
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commitdiff
2020-03-06
gmungoc
JAL-3468 i18n and additional unit tests
feature/JAL-3468featureDescriptionEllipsis
tree
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commitdiff
2020-03-05
Jim Procter
Merge branch 'improvement/JAL-3543_dont_report_null_ver...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 small tidy
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 improvement to feature description truncation...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 Obsessively fixed self-closing <br/> tags
tree
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commitdiff
2020-03-03
soares
JAL-3468 Adapted methods to report how many features...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-03-02
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
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commitdiff
2020-02-29
gmungoc
JAL-3518 correct override for ChimeraX colour by residues
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-27
Ben Soares
JAL-3543 remove debugging output
improvement/JAL-3543_dont_report_null_versions_in_java_console
tree
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commitdiff
2020-02-27
Ben Soares
Merge branch 'develop' into improvement/JAL-3543_dont_r...
tree
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commitdiff
2020-02-27
Ben Soares
JAL-3543 Conditional reporting of Install4j and Getdown...
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...
bug/JAL-3412idWidthDiscrepancy
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3296changeStartInvalidateCursor...
tree
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commitdiff
2020-02-26
Jim Procter
Merge branch 'bug/JAL-3477_memory_max_allocation' into...
tree
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commitdiff
2020-02-26
Jim Procter
Merge branch 'improvement/JAL-3449_add_install4j_instal...
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'bug/JAL-3536getCrossrefTwice' into develop
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 ensure transparency slider position is updated...
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 avoid repainting twice in splitframe
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 nice to have enabling/disabling of apply/cance...
features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 use the recommended way of catching tab select...
tree
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commitdiff
2020-02-20
gmungoc
JAL-3187 repaint complement after loading on features
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 individual feature settings panel has revert...
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 i18n for titles in windows/tabs
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3535 todo re titles for CDS and Protein views in...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 - tabbed pane is nulled when feature settings...
tree
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commitdiff
2020-02-19
Ben Soares
Merge branch 'develop' into improvement/JAL-3449_add_in...
improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 JAL-2764 close feature settings when parent...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3538 anti-aliasing enabled by default
tree
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commitdiff
2020-02-18
Ben Soares
JAL-3449 merge from develop
tree
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commitdiff
2020-02-18
Jim Procter
JAL-3529 attempt to guess database for a sequence’s...
tree
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
tree
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commitdiff
2020-02-18
Mungo Carstairs
JAL-3536 JAL-3187 don't create duplicate CDS-to-protein...
bug/JAL-3536getCrossrefTwice
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3534 patch for simple case (Protein or Nucleotide...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 better semantics for feature settings closed...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3532 TODO comment
tree
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commitdiff
2020-02-14
Jim Procter
fix for JAL-3529
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3529 preferentially output source dbrefs or princip...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3187 alternative solution - gather feature settings...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 applet alignFrame needs new api method
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 first stab at ‘show CDS/Protein Settings’...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 convenience method on SplitContainerI to retri...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-1354 JAL-3528 report missing keys for MessageManage...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 fixed stopProgressBar (broken in pull up refac...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
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commitdiff
2020-01-31
gmungoc
JAL-2422 temporary hacks removed; use hex colours for...
tree
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commitdiff
2020-01-31
gmungoc
JAL-2422 more responsive Chimera/X path prompts in...
tree
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commitdiff
2020-01-30
gmungoc
JAL-2422 save/restore ChimeraX session
tree
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commitdiff
2020-01-28
gmungoc
Merge branch 'feature/JAL-3121gffAttributeMap' into...
tree
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commitdiff
2020-01-28
gmungoc
JAL-3187 one more obsolete method removed
tree
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commitdiff
2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
tree
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commitdiff
2020-01-24
gmungoc
JAL=3121 more data format validation/tests, help text...
feature/JAL-3121gffAttributeMap
tree
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commitdiff
2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3449_add_install4j_instal...
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3474_lots_of_.cvsignore_f...
tree
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commitdiff
2020-01-14
gmungoc
JAL-2422 proof of concept adaptations for ChimeraX...
tree
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commitdiff
2020-01-10
Ben Soares
JAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
tree
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commitdiff
2020-01-09
Ben Soares
JAL-3477 Refactoring based on CR-JAL-189
tree
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commitdiff
2020-01-09
Ben Soares
JAL-3477 Javadoc, refactoring and slight changes to...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 'label' command to highlight ChimeraX residue...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 write Jalview features to ChimeraX via command...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 basic proof of concept of ChimeraX opened...
tree
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commitdiff
2019-12-06
Ben Soares
JAL-3449 Added more versions to getdown splashscreen...
tree
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commitdiff
2019-11-22
Ben Soares
JAL-3449 install4j version, install4j template version...
tree
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commitdiff
2019-11-20
Ben Soares
JAL-3477 A bit of refactoring for the better
tree
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commitdiff
2019-11-19
Ben Soares
JAL-3210 removing overly complicated logging. Settling...
tree
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commitdiff
2019-11-19
gmungoc
JAL-3210 use JSUtil methods getFileBytes, getApplet
tree
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commitdiff
2019-11-18
Ben Soares
JAL-3477 New jvmmemmax config option in getdown and...
tree
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commitdiff
2019-11-18
Ben Soares
JAL-3477 New sensible default decisions on memory,...
tree
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commitdiff
2019-11-12
gmungoc
JAL-3274 resource path correction, code tidying (consta...
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3130 skip Taskbar in JalviewJS
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 reverted (ignore previous commit)
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3130 can't read java.specification.version...
tree
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commitdiff
2019-11-05
gmungoc
JAL-3120 JAL-3130 can't read "java.specification.versio...
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3263 redo 'Mandarin' character for JS...
tree
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commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
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commitdiff
2019-10-31
gmungoc
JAL-3468 truncate feature description to 40 chars in...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
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