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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745 improvement to retreive already downloaded...
tree
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commitdiff
2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
tree
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commitdiff
2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1739 added svid - serial version id to hold version...
tree
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commitdiff
2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-20
gmungoc
JAL-796 JAL-1652 better implementation (key binding...
tree
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commitdiff
2015-05-20
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
tree
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commitdiff
2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1541 Modified BioJs exporter to take advantage...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
tree
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commitdiff
2015-05-18
gmungoc
JAL-1652 Escape key now closes Find dialog
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
tree
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commitdiff
2015-05-15
gmungoc
JAL-1737 ignore non-positional annotations for display
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 added test for regex actually used; include...
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main methods converted to JUnit
tree
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commitdiff
2015-05-13
gmungoc
JAL-1575 no-cache headers added to (empty) rest response
tree
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commitdiff
2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
tree
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commitdiff
2015-05-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
tree
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commitdiff
2015-05-12
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_1641 added unit test and minor house keeping
tree
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commitdiff
2015-05-11
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
tree
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commitdiff
2015-05-09
unknown
JAL-1601 bugfix on previous commit
tree
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commitdiff
2015-05-09
unknown
JAL-1601 patch burial display for prediction loaded...
tree
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commitdiff
2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1731 fix JPred4 citation in legacy client code
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial represent...
tree
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commitdiff
2015-05-06
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 broadcast empty selection (to clear selection)
features/JAL-1725chimeraListener
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 limit thread pool size; prefix /jalview to...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1700 Improved the error handling mechanism for...
tree
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commitdiff
2015-05-01
tcofoegbu
Merge branch 'bug/JAL-1726_External-integration-test_PD...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1726 Added external integration test for PDB Rest API
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 refining 'copy format from' as applied to...
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 unused fields removed
tree
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commitdiff
2015-04-30
Mungo Carstairs
JAL-845 reduced height to allow for Desktop decorators...
tree
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commitdiff
2015-04-30
tcofoegbu
Merge branch 'bug/JAL-1717_make-pbd-id-case_insensitive...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1690 preserve scaling in New View, synch id width...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1715 implemented selection validation for the new...
tree
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commitdiff
2015-04-27
tcofoegbu
Merge branch 'features/JAL-1714_specify-mulitple-id_PDB...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1714 improved the new PDB Sequence fetcher by enabl...
tree
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commitdiff
2015-04-27
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'features/JAL-1711_PDB-specify-chain'...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1710, JAL-1711 Bug fix for exception thrown when...
tree
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commitdiff
2015-04-24
gmungoc
JAL-1691 prevent propagation of scrolling on mouseover...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'bug/JAL-1707_retrieve-pdb-structure-for...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1707 bug fix - also search using sequence name
tree
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commitdiff
2015-04-23
gmungoc
JAL-1702 corrected check for 'no colours selected'
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 distinguish between 'font too small' and ...
tree
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commitdiff
2015-04-23
gmungoc
JAL-1681 create mappings before AlignFrame to ensure...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 set split frame divider safely for eXpand Views
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 fixed to correctly restore the last dialog...
tree
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commitdiff
2015-04-22
gmungoc
JAL-845 fix SplitFrame sizing on eXpand Views
tree
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commitdiff
2015-04-22
gmungoc
JAL-1690 fix NPE on Cancel when not in split frame
tree
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commitdiff
2015-04-21
gmungoc
JAL-1693 mappings added back to the original alignment
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1697 added ablity to select/view cached structures...
bug/JAL-1697_browse-local-structures
tree
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commitdiff
2015-04-17
tcofoegbu
Merge branch 'bug/JAL-1698_Append-Structures' into...
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1698 bug fix to enable addition of a single structu...
bug/JAL-1698_Append-Structures
tree
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commitdiff
2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'bug/Jal-1696_disable-pdb_id-field-setting...
tree
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commitdiff
2015-04-14
tcofoegbu
JAL-1696 disabled editing of PDB Id field from settings
bug/Jal-1696_disable-pdb_id-field-settings
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1681 work around ConcurrentModificationException...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 new property ENABLE_SPLIT_FRAME
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 parameter controls whether SplitFrame is enabled
tree
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commitdiff
2015-04-08
gmungoc
JAL-1270 protection against NullPointer when run as...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 defensive check for null
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
tree
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commitdiff
2015-03-30
gmungoc
JAL-1264 remove broken applet build dependencies
tree
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
tree
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commitdiff
2015-03-27
tcofoegbu
JAL-1667 updated the collection type for searchSummaryF...
tree
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commitdiff
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