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Merge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2_Branch
[jalview.git]
/
src
/
jalview
/
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-23
Jim Procter
employ test and secondary structure character for deter...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1593 allow per-sequence shading of RNA helix (store...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 test for open/close RNA parenthesis character
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 consistent handling of sequence and alignment...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 preserve input ordering for stockholm files...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 remove stdout on parsing RNA
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1152 avoid NPE on null alignment annotation vector
tree
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commitdiff
2014-11-21
gmungoc
JAL-1528 found and readded Colour by Chain ('rainbow...
tree
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commitdiff
2014-11-21
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-674 add RNA sequence associated annotation to align...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1140 sensible name for seuqences in RNAML files...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1489 change initial value to distinguish non-rna...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1592 JAL-1489 avoid invalid RNA structure and disti...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-1569 rna pair code in secondary structure character...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-674 JAL-1569 mark RNA helix number in the value...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-1569 remove log output during RNA secondary structu...
tree
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commitdiff
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
tree
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commitdiff
2014-11-19
Charles Ofoegbu
JAL-1522 included installation details in log output
tree
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commitdiff
2014-11-18
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
tree
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commitdiff
2014-11-18
Charles Ofoegbu
JAL-998 tooltip wrapping
tree
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commitdiff
2014-11-18
gmungoc
JAL-1349 rebuild Web Service menu after add/delete...
tree
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commitdiff
2014-11-18
gmungoc
JAL-1582 removing finalize() as may have unexpected...
tree
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commitdiff
2014-11-18
gmungoc
JAL-1582 quicker tooltip on service presets (and code...
tree
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commitdiff
2014-11-18
gmungoc
JAL-1349 refresh menu presets after 'create' new
tree
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commitdiff
2014-11-18
gmungoc
JAL-1580 Chimera path tooltip, removed focusListener
tree
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commitdiff
2014-11-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into Release_2_...
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Undo changes to JabaWsServerQuery.java
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Undo changes to JabaWsServerQuery.java
tree
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commitdiff
2014-11-17
gmungoc
JAL-1581 Tooltip slimmed down, Help button added on...
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 distinct calc IDs for JPredMSA and Jpred singl...
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 propagate results of JABA sequence based predi...
tree
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commitdiff
2014-11-17
Jim Procter
imports and formatting
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 propagate JPred annotation from legacy jpred...
tree
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commitdiff
2014-11-17
Jim Procter
formatting
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 JAL-407 instrument setDataset to add dataset...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
JAL-1043 patch to show warning dialog when webservice...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1293 hide/show sequence annotations with hide/revea...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1586 chimera file chooser added, validate on OK...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Merge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
updated documentation
tree
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commitdiff
2014-11-17
Jim Procter
Merge branch 'Release_2_8_2_Branch' into mrg_dev_282
tree
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commitdiff
2014-11-17
Charles Ofoegbu
comand line support for svg generation
tree
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commitdiff
2014-11-17
gmungoc
JAL-1580 size parameters dialog to height of Desktop
tree
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commitdiff
2014-11-17
Charles Ofoegbu
JAL-1570 patch to enable adding a webservice which...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera Help doc + fixes to setting colours
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera tidy errors, focus after align, close...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-17
Jim Procter
Merge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
tree
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
house-keeping
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-11-12
Jim Procter
JAL-974 fix class contamination for jalviewLite build
tree
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commitdiff
2014-11-12
Jim Procter
javadoc
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 use the getMapping/transfer to transfer annotat...
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 patch broken getMapping function
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 note about broken .transfer method (expect...
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 javadoc
tree
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commitdiff
2014-11-11
gmungoc
JAL-1527 opening a project saved with JMol should use...
tree
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1152annotationSorting' into...
tree
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commitdiff
2014-11-06
gmungoc
JAL-1152 use a proper RadioButton not a faked one
tree
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commitdiff
2014-11-05
gmungoc
JAL-674 Prefences tweaks incl help documentation for...
tree
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commitdiff
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
tree
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commitdiff
2014-11-04
gmungoc
JAL-1152 annotation sort algorithm optimisation
tree
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commitdiff
2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
tree
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commitdiff
2014-11-03
gmungoc
Merge branch 'features/JAL-1152annotationSorting' of...
tree
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commitdiff
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-11-03
Jim Procter
JAL-795 JAL-674 tweaked logic to avoid black annotation...
tree
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commitdiff
2014-11-03
Jim Procter
fix for JAL-1579 create threshold object for annotation...
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 formatting and imports
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
tree
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commitdiff
2014-11-03
Jim Procter
javadoc
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 bug fix for 'no sort' case + tests for autocal...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional informat...
tree
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commitdiff
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 propagate annotation onto mapped sequence and...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 use PDB ID<>File registry to look up correct...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 return original and replacement sequences and...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 flag and proxy method to distinguish setMapping...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 map on StructureSelectionManager to record...
tree
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commitdiff
2014-10-30
Jim Procter
patch for JAL-795 - use base secondary structure colour...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
tree
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commitdiff
next