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Use AAFrequency final keys
[jalview.git]
/
src
/
jalview
/
2006-10-10
amwaterhouse
Use AAFrequency final keys
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commitdiff
2006-10-10
amwaterhouse
SetTooltip empty
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commitdiff
2006-10-10
amwaterhouse
Optimized
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commitdiff
2006-10-10
amwaterhouse
aaIndex replaces aaHash
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commitdiff
2006-10-10
amwaterhouse
static final strings for consensus keys
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commitdiff
2006-10-10
amwaterhouse
Consensus and conservation updated in threads
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commitdiff
2006-10-09
jprocter
fixed log4j complaints for vamsas logging (again)
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commitdiff
2006-10-09
jprocter
fixed log4j complaints for vamsas logging.
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commitdiff
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
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commitdiff
2006-10-09
jprocter
set firstColumn property for an alignmentView object.
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commitdiff
2006-10-09
jprocter
fixed getCompactAlignment method to return proper cigar...
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
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commitdiff
2006-10-06
jprocter
javadoc
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commitdiff
2006-10-06
jprocter
new getVisibleContigs method mirrors the getVisibleCont...
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commitdiff
2006-10-06
amwaterhouse
AAFrequency optimized
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commitdiff
2006-10-06
amwaterhouse
Set consensus as hashtble[]
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commitdiff
2006-10-05
amwaterhouse
Multiple Views
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commitdiff
2006-10-05
amwaterhouse
BatchSize now 10
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commitdiff
2006-10-05
amwaterhouse
OutOfMemoryError test
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commitdiff
2006-10-05
amwaterhouse
TabbedPanes for views
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commitdiff
2006-10-05
amwaterhouse
lower case available
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commitdiff
2006-10-05
amwaterhouse
AlignFrame must take width and height
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commitdiff
2006-10-05
amwaterhouse
Sequenceset may be empty, multiple views
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commitdiff
2006-10-05
amwaterhouse
DEFAULT_WIDTH
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commitdiff
2006-10-03
amwaterhouse
Check annotation is editable
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commitdiff
2006-10-03
amwaterhouse
Send DAS requests in batches of 20
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commitdiff
2006-10-03
amwaterhouse
DB seqs may be lower or upper case
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commitdiff
2006-10-03
amwaterhouse
BoldFont upperCase
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commitdiff
2006-10-03
amwaterhouse
Remove empty() from feature ToolTip
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commitdiff
2006-10-03
amwaterhouse
Check selection scroll beyond aligmnment height
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commitdiff
2006-10-03
amwaterhouse
Check on vscrollMax values
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commitdiff
2006-10-03
amwaterhouse
upperCaseBold
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commitdiff
2006-10-03
amwaterhouse
TurnColour bug on popupmenu applet
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commitdiff
2006-09-27
jprocter
fixed tree building exception when one residue or a...
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commitdiff
2006-09-18
amwaterhouse
Draw hidden column marker correctly
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commitdiff
2006-09-18
amwaterhouse
click node to select sequences
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commitdiff
2006-09-15
amwaterhouse
Simplified schema
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commitdiff
2006-09-12
amwaterhouse
hideSequence hide all before recalc consensus
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commitdiff
2006-09-12
amwaterhouse
Allow alt for group editing
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commitdiff
2006-09-12
amwaterhouse
For now ignore middle mouse font resize on Mac applet
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commitdiff
2006-09-12
amwaterhouse
Allow alt button for Mac applet group editing
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commitdiff
2006-09-11
amwaterhouse
Comment out lower case colouring for bug fix release
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commitdiff
2006-09-11
amwaterhouse
Remove system.outs
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commitdiff
2006-09-11
amwaterhouse
get idWidth should use italic font when getting size
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commitdiff
2006-09-11
amwaterhouse
Error message if file not found moved for headless...
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commitdiff
2006-09-11
amwaterhouse
visWidth allows borders to be drawn around offscreen...
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commitdiff
2006-09-11
amwaterhouse
Remove system.out
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commitdiff
2006-09-11
amwaterhouse
getVisibleIdWidth() for making images
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commitdiff
2006-09-07
jprocter
added copy consensus sequence to consensus annotation...
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commitdiff
2006-09-05
jprocter
getVisibleContigs() returns start and end positions...
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commitdiff
2006-09-05
jprocter
javadoc on contigs
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commitdiff
2006-09-01
amwaterhouse
Dont look for middle mouse on the Mac
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commitdiff
2006-09-01
amwaterhouse
MAC moved to viewport
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commitdiff
2006-09-01
amwaterhouse
Feature Settings
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commitdiff
2006-08-30
amwaterhouse
GraphHeight might be zero
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commitdiff
2006-08-30
amwaterhouse
jnet file is 1 to 1 mapping
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commitdiff
2006-08-30
amwaterhouse
Remove unnecessary separotor
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commitdiff
2006-08-30
amwaterhouse
Gap added to aa3Hash
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commitdiff
2006-08-30
amwaterhouse
User colours are case sensitive
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commitdiff
2006-08-29
amwaterhouse
Can shrink graph to zero
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commitdiff
2006-08-29
amwaterhouse
No stacktrace
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commitdiff
2006-08-29
amwaterhouse
createMapping alreadyMapped
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commitdiff
2006-08-29
amwaterhouse
Additional repaint
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commitdiff
2006-08-29
amwaterhouse
jnetfile can be loaded onto alignment
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commitdiff
2006-08-29
amwaterhouse
SequenceMapping updated
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commitdiff
2006-08-29
amwaterhouse
Jnet files sent to servlet as annotations
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commitdiff
2006-08-22
amwaterhouse
To uppercase only visible
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commitdiff
2006-08-22
jprocter
getSequenceStrings() bug fixed.
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commitdiff
2006-08-22
amwaterhouse
Remove group when hiding cols from scalePanel
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commitdiff
2006-08-22
amwaterhouse
Put transparency back
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commitdiff
2006-08-22
amwaterhouse
make 1.1 compatible
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commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
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commitdiff
2006-08-22
jprocter
off by one bug in hiden column unmarshalling
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
Add uniprot DBref
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commitdiff
2006-08-21
amwaterhouse
Remove system.out
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commitdiff
2006-08-21
amwaterhouse
1.1 compatible
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commitdiff
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
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commitdiff
2006-08-21
jprocter
fixed undo-redo bug, hidden columns are moved with...
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commitdiff
2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
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commitdiff
2006-08-21
jprocter
fix for truncation of sequence associated annotation...
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commitdiff
2006-08-21
jprocter
added shiftList to record changes in alignment column...
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commitdiff
2006-08-21
jprocter
remove gaps method from AlignFrame.remove_gaps_actionPe...
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commitdiff
2006-08-21
jprocter
inverse ShiftList and SequenceI.gapMap->ShiftList methods.
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commitdiff
2006-08-21
jprocter
avoid null pointer exceptions
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commitdiff
2006-08-20
jprocter
javadoc
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commitdiff
2006-08-18
amwaterhouse
Check colourScheme is not null - jalview prior 2.5...
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commitdiff
2006-08-18
amwaterhouse
dont remove all representative seqs on delete groups
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commitdiff
2006-08-18
amwaterhouse
remove all representative seqs on delete groups
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commitdiff
2006-08-18
amwaterhouse
treeFile = treeFile
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commitdiff
2006-08-18
amwaterhouse
Only discover DAS sources if panel shown
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commitdiff
2006-08-18
amwaterhouse
only set new layout if 2 buttons visible
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commitdiff
2006-08-18
amwaterhouse
Jalview features format adds links as hrefs
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commitdiff
2006-08-17
amwaterhouse
H key updates
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commitdiff
2006-08-17
amwaterhouse
OptionPane invokeLater
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commitdiff
2006-08-17
amwaterhouse
If no annotation exists
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commitdiff
2006-08-17
amwaterhouse
Set bg white
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commitdiff
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