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JAL-2994 use pattern matches to search for chimera.exe
[jalview.git] / src / jalview /
2018-05-28 gmungocJAL-2994 use pattern matches to search for chimera.exe tree | commitdiff
2018-05-28 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases... tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea... tree | commitdiff
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into... tree | commitdiff
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows tree | commitdiff
2018-05-25 Jim ProcterJAL-1460 javadoc tree | commitdiff
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and... tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when... tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces... tree | commitdiff
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel tree | commitdiff
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-05-22 gmungocJAL-2716 fix to reset choice parameter on Revert tree | commitdiff
2018-05-22 gmungocJAL-2716 fix broken checkIfModified behaviour tree | commitdiff
2018-05-22 gmungocJAL-2629 method refactor and menu tidying tree | commitdiff
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797 tree | commitdiff
2018-05-15 gmungocJAL-2719 parse bit score annotation from search results tree | commitdiff
2018-05-15 gmungocJAL-1264 exclude score-only from 'Add Reference Annotat... tree | commitdiff
2018-05-15 gmungocJAL-2629 JAL-2937 respect 'align automatically' option... tree | commitdiff
2018-05-14 gmungocJAL-2989 refactoring to reduce code duplication tree | commitdiff
2018-05-14 gmungocJAL-2711 show short file names in search database combo box tree | commitdiff
2018-05-14 gmungocJAL-2989 support value display names for Option or... tree | commitdiff
2018-05-14 gmungocJAL-2711 removed unused and flaky utility method tree | commitdiff
2018-05-14 gmungocJAL-2939 check for hmm present when processing groups tree | commitdiff
2018-05-11 gmungocJAL-2985 show label instead of checkbox for a required... tree | commitdiff
2018-05-11 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue... tree | commitdiff
2018-05-10 gmungocJAL-2629 revert to showing Profile parameter even if... tree | commitdiff
2018-05-10 gmungocJAL-2629 default HMMBuild to alignment if not specified... tree | commitdiff
2018-05-10 gmungocJAL-591 reduced updating by checking/setting 'updating... tree | commitdiff
2018-05-10 gmungocJAL-2629 handle decline 'Add Database' tree | commitdiff
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments... tree | commitdiff
2018-05-10 gmungocJAL-591 show choice list with a single option tree | commitdiff
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... tree | commitdiff
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None tree | commitdiff
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... tree | commitdiff
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... tree | commitdiff
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... tree | commitdiff
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... tree | commitdiff
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... tree | commitdiff
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS tree | commitdiff
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... tree | commitdiff
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... tree | commitdiff
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... tree | commitdiff
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou... tree | commitdiff
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... tree | commitdiff
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... tree | commitdiff
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled tree | commitdiff
2018-04-24 gmungocJAL-2939 exit calc thread if no HMM in alignment tree | commitdiff
2018-04-24 gmungocJAL-591 use constant for Preferences key tree | commitdiff
2018-04-24 gmungocJAL-2616 unused field removed tree | commitdiff
2018-04-23 gmungocJAL-2956 save/restore HMMER profile to/from Jalview... tree | commitdiff
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns tree | commitdiff
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys tree | commitdiff
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only tree | commitdiff
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max... tree | commitdiff
2018-04-20 gmungocJAL-591 tidy and comment code tree | commitdiff
2018-04-20 gmungocJAL-591 OptionBox FlowLayout, tweaks to wrapping of... tree | commitdiff
2018-04-19 gmungocJAL-591 utility method renamed and slightly generalised tree | commitdiff
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-04-18 gmungocJAL-2629 corrected cutoff parameter passing to hmmsearch tree | commitdiff
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi... tree | commitdiff
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... tree | commitdiff
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild... tree | commitdiff
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe... tree | commitdiff
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some... tree | commitdiff
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView tree | commitdiff
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... tree | commitdiff
2018-04-12 gmungocJAL-1847 minor post-review updates tree | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments tree | commitdiff
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions... tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2629 more error checking tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2937 extract reusable utility method tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2069 typo tree | commitdiff
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... tree | commitdiff
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