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JAL-3033 build.xml:build-site runs build-site.xml to populate site/ with prebuilt...
[jalview.git]
/
src
/
jalview
/
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
|
commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2019-01-11
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
tree
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commitdiff
2019-01-11
hansonr
(commented out but potentially useful) methods to tap...
tree
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commitdiff
2019-01-11
hansonr
JS optimization for too aggressive dynamic operation...
tree
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commitdiff
2019-01-11
hansonr
adding (unnecessary, but informative super() call in...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 removed redundant method to tests
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into features/pca_j...
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2019-01-09
Jim Procter
JAL-3063 remove stale JAXB binding POJO
tree
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commitdiff
2019-01-09
gmungoc
JAL-3032 stub JS tabbed pane removed as not used
tree
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commitdiff
2019-01-09
gmungoc
JAL-3032 tweak inner/outer class references
tree
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commitdiff
2019-01-09
gmungoc
JAL-3032 refine 'empty status message' test (JS issue...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Added i18n for the example filenames in Prefer...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 forgot to add this file after extracting the...
tree
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commitdiff
2019-01-09
hansonr
simplification of FeatureSettings inner classes
tree
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commitdiff
2019-01-09
hansonr
comment added in relation to status bar
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Made one more suggested change from code review
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some more suggested changes from code...
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
tree
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commitdiff
2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
feature/JAL-3180colourAnnotationMenu
tree
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commitdiff
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testab...
feature/JAL-3181linkOrdering
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 simplified code and test
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-25
hansonr
better Jmol help link
tree
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commitdiff
2018-12-21
gmungoc
JAL-1767 minimise local variable scope
tree
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commitdiff
2018-12-21
gmungoc
JAL-3032 prefer Jalview.isJS() to j2sNative
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
hansonr
JalviewFileChooser back to original; synth. ref fixed...
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-20
hansonr
preliminary hack fix for synthetic reference issue
tree
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commitdiff
2018-12-20
hansonr
seq panel issue with shift-left-mouse drag fix
tree
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commitdiff
2018-12-20
hansonr
label work; adds preliminary _j2sclasslist.txt
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crossha...
bug/JAL-2621
tree
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commitdiff
2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
tree
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commitdiff
2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
tree
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commitdiff
2018-12-18
gmungoc
JAL-3048 fix NPE in file chooser callbacks map
tree
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commitdiff
2018-12-18
gmungoc
Merge branch 'JAL-3048dialogRunner2' into Jalview-BH...
tree
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commitdiff
2018-12-18
gmungoc
JAL-3032 revert table repaint customisations
tree
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commitdiff
2018-12-18
gmungoc
JAL-3048 DialogRunnerI reduced to minimal implementation
tree
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commitdiff
2018-12-18
hansonr
removing special needs for JavaScript table repainting
tree
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commitdiff
2018-12-18
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-18
hansonr
table work
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-17
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
tree
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commitdiff
2018-12-17
gmungoc
JAL-3068 tidy status bar messaging
tree
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commitdiff
2018-12-17
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-12-13
hansonr
SwingJS 3.2.4.05 should fix JFileChooser synthetic...
tree
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commitdiff
2018-12-11
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into...
tree
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commitdiff
2018-12-10
gmungoc
JAL-3048 wip externalise trigger from RunResponse
tree
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commitdiff
2018-12-10
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into
tree
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commitdiff
2018-12-10
gmungoc
JAL-1421 added type to List and Vector
feature/JAL-3169cancelOverwrite
tree
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commitdiff
2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
tree
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commitdiff
2018-12-10
gmungoc
JAL-3048 DialogRunner changes (wip)
tree
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commitdiff
2018-12-10
gmungoc
JAL-1544 corrected 'adjunst' to 'adjust'
tree
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commitdiff
2018-12-10
hansonr
Faster JTable processing; fixes Annotation painting...
tree
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commitdiff
2018-12-06
gmungoc
JAL-3048 response() renamed addResponse(); checkstyle...
tree
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commitdiff
2018-12-06
gmungoc
JAL-3048 explicit instead of default 'No' response...
tree
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commitdiff
2018-12-06
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
tree
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commitdiff
2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
tree
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commitdiff
2018-12-04
gmungoc
JAL-3032 set radio buttons transparent
tree
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commitdiff
2018-12-04
hansonr
x,y switch in FeatureIcon
tree
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commitdiff
2018-12-03
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3168 include feature type in colour chooser dialog...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3167 end cell editing on cancel in colour chooser
tree
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commitdiff
2018-12-03
gmungoc
JAL-3058 provide cancel callback method for colour...
tree
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commitdiff
2018-12-01
hansonr
adding jaxbtest.jvx and directing JalviewJS2.java to...
tree
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commitdiff
2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
tree
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commitdiff
2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
tree
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commitdiff
2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
tree
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commitdiff
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
tree
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commitdiff
2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
tree
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commitdiff
2018-11-27
gmungoc
JAL-3163 only log missing message keys once each
tree
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commitdiff
2018-11-26
gmungoc
JAL-3162 only allow start <= end while modifying
bug/JAL-3162featureStartLtEnd
tree
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commitdiff
2018-11-26
gmungoc
JAL-3032 make JS properties conditional on Jalview...
tree
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commitdiff
2018-11-26
hansonr
adds swingjs.overflow.hidden client property
tree
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commitdiff
2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
bug/JAL-3161annotationTooltipRange
tree
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commitdiff
2018-11-20
Jim Procter
JAL-3127 Sequence ID Colour and nominal spanish translation
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 javadoc, don’t darken white when shading resid...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3156 JAL-3127 code tidy
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
tree
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commitdiff
2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
bug/JAL-3154tableColumnDrag
tree
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commitdiff
2018-11-19
gmungoc
JAL-3032 J2S variant for painting JTable
tree
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commitdiff
2018-11-19
gmungoc
JAL-3032 reinstate methods now available in SwingJS
tree
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commitdiff
2018-11-18
hansonr
adds JS hook for JTable repaint
tree
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commitdiff
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