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patched XML parser to ensure it properly escapes non-html friendly characters prior...
[jalview.git]
/
src
/
2011-04-19
jprocter
patched XML parser to ensure it properly escapes non...
tree
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commitdiff
2011-04-08
jprocter
todo
tree
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commitdiff
2011-04-08
jprocter
imported properties via -props should never be overwritten
tree
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commitdiff
2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-805
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-804
tree
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commitdiff
2011-02-28
jprocter
excess imports
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commitdiff
2011-02-27
jprocter
patch for JAL-780
tree
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commitdiff
2011-02-27
jprocter
patch for occasional ArrayIndexOutOfBounds
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commitdiff
2011-02-27
jprocter
patch for JAL-792
tree
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commitdiff
2011-02-27
jprocter
first patch for JAL-774 - ensure end is a valid bound...
tree
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commitdiff
2011-02-25
jprocter
first approximation for JAL-782 - hint that opaque...
tree
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commitdiff
2011-02-18
jprocter
JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
new alignmentPanel api + JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour and new alignmentPanel api
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour
tree
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commitdiff
2011-02-18
jprocter
JAL-574
tree
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commitdiff
2011-02-18
jprocter
convenience method to discover all Jmols
tree
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commitdiff
2011-02-18
jprocter
JAL-779 and some redraw refinements
tree
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commitdiff
2011-02-18
jprocter
JAl-574
tree
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commitdiff
2011-02-18
jprocter
avoid exceptions for orphaned windows
tree
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commitdiff
2011-02-18
jprocter
bugfixing for JAL-778
tree
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commitdiff
2011-02-18
jprocter
new multiple multiple view associations JAL-777
tree
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commitdiff
2011-02-18
jprocter
call to release any explicit event handler references...
tree
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commitdiff
2011-02-18
jprocter
dynamic alignmentPanel menu class
tree
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commitdiff
2011-02-18
jprocter
call to release any explicit event handler references
tree
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commitdiff
2011-02-18
jprocter
removed explicit 'linkedAlignmentPanel' flag
tree
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commitdiff
2011-02-18
jprocter
fix for occasional race conditions
tree
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commitdiff
2011-02-17
jprocter
fixes JAL-778 - flag to indicate binding between an...
tree
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commitdiff
2011-02-17
jprocter
protype api
tree
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commitdiff
2011-02-17
jprocter
classCast exception - attempting to update registry...
tree
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commitdiff
2011-02-15
jprocter
fix for JAL-776
tree
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commitdiff
2011-02-14
jprocter
JAL-769
tree
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commitdiff
2011-02-14
jprocter
JAL-564 (annotation panel height adjustment) and alignm...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 (mouseover debugging) and JAL-564 (annotation...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 and JAL-564
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-14
jprocter
refactored annotation panel height calculation
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-14
jprocter
javadoc
tree
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commitdiff
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
tree
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commitdiff
2011-02-04
jprocter
JAL-761
tree
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commitdiff
2011-02-04
jprocter
1.2ish awt methods
tree
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commitdiff
2011-02-04
jprocter
1.2ish awt methods and excluding unused code
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commitdiff
2011-02-04
jprocter
don't need to retrieve idwidthadjuster
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commitdiff
2011-02-04
jprocter
javadoc
tree
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commitdiff
2011-02-04
jprocter
patch for JAL-760
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commitdiff
2011-02-04
jprocter
group associated annotation and logos JAL-516 JAL-759
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commitdiff
2011-02-04
jprocter
adjustable annotation panel height and vertical scrollb...
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-21
jprocter
search result highlighting and scrolling and some patch...
tree
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display JAL-469
tree
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display
tree
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commitdiff
2011-01-21
jprocter
logic bug for auto scrolling
tree
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
tree
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753
tree
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commitdiff
2011-01-21
jprocter
ensure source is rarely null
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-18
jprocter
patch for JAL-695 - need to test if this is observed...
tree
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commitdiff
2011-01-18
jprocter
patch for JAL-695
tree
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commitdiff
2011-01-18
jprocter
javadoc
tree
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commitdiff
2011-01-18
jprocter
javadoc
tree
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commitdiff
2011-01-18
jprocter
avoid creating lots of identical search results. patch...
tree
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commitdiff
2011-01-18
jprocter
removed securityException caused by accessing class...
tree
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commitdiff
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
tree
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commitdiff
2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
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commitdiff
2011-01-17
jprocter
warn user that no JS callbacks will work by default...
tree
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commitdiff
2011-01-17
jprocter
need to own lock to notify
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commitdiff
2011-01-17
jprocter
need to own lock to notify
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commitdiff
2011-01-17
jprocter
avoid 1.5 specific methods
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commitdiff
2011-01-17
jprocter
revised default separator string expression to avoid...
tree
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commitdiff
2011-01-17
jprocter
allow debug messages to be output before jscallback...
tree
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commitdiff
2011-01-17
jprocter
refactored javascript callback to parent class.
tree
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commitdiff
2011-01-17
jprocter
eliminate utf8 compilation errors
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commitdiff
2011-01-17
jprocter
use local reference for current target frame as set...
tree
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commitdiff
2011-01-17
jprocter
JAL-750 and JAL-451
tree
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commitdiff
2011-01-13
jprocter
output jsexception message
tree
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commitdiff
2011-01-12
jprocter
handlers with no specified alignframe broadcast events...
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commitdiff
2011-01-12
jprocter
1.1 compat
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commitdiff
2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
tree
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commitdiff
2011-01-12
jprocter
selection should be sent after refresh happens
tree
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commitdiff
2011-01-12
jprocter
javadoc
tree
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commitdiff
2011-01-12
jprocter
java side javascript callback enactors JAL-469
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commitdiff
2011-01-10
jprocter
patch for JAL-740
tree
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commitdiff
2011-01-07
jprocter
refactored dropFile allowing known information to be...
tree
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commitdiff
2011-01-07
jprocter
bulk associate pdb files dropped on to alignment :...
tree
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commitdiff
2011-01-07
jprocter
refactored guts of pdb file association code
tree
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commitdiff
2011-01-07
jprocter
check for all http protocols
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commitdiff
2011-01-07
jprocter
refactored to use SequenceI
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commitdiff
2011-01-06
jprocter
JAL-730
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commitdiff
2011-01-05
jprocter
more robust calculation of partition from possibly...
tree
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commitdiff
2011-01-05
jprocter
inline submission of alignment with correct crlf
tree
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commitdiff
2011-01-05
jprocter
ensure group props are recalculated before alignment...
tree
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commitdiff
2011-01-05
jprocter
revised shmr service
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commitdiff
2011-01-05
jprocter
todo and ensure old annotation/groups are removed befor...
tree
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commitdiff
2011-01-05
jprocter
todo
tree
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commitdiff
2011-01-05
jprocter
exception reporting for bad URLs
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
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