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JAL-1701 help page for Split Frame view linked in
[jalview.git]
/
src
/
2015-06-06
Jim Procter
JAL-653 allow a dummy sequence to take on attributes...
tree
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commitdiff
2015-06-05
tcofoegbu
Merge branch 'bug/JAL-1760_restore-hidden-seqs' into...
tree
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
tree
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commitdiff
2015-06-05
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 abstract sequence model to support file backed...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1752 structure highlight scoped to only its mapped...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1588 error dialog if Chimera project opened on...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1746 return empty string rather than null in getSta...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 Chimera command timeout increased to 5 secs...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 duplicate assignment removed (no functional...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1753 JAL-1596 asynchronous command to Chimera ...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 code tidy only, no functional change
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 refactor sequence interface to separate concret...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-845 jim @mungo: should this be in a package local...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 set the warningMessage for the file source...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 GFF attributes parsing mechanism, with first...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 trim initial tab in sequence feature ATTRIBUTES
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequen...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 convenience method to resolve strand attribute...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1115 JAL-653 partial introduction of List interface...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 refactor setTableData to more sensible name...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-04
gmungoc
Clear status bar message when initialisation complete
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 small tidy of AlignSeq.printMapping (+Junit)
tree
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commitdiff
2015-06-04
gmungoc
JAL-1544 spelling in javadoc only
tree
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commitdiff
2015-06-04
gmungoc
JAL-1622 code tidy (+Junit) of collateForPdb()
tree
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commitdiff
2015-06-04
gmungoc
JAL-1747 close all windows on Quit (+small bug fix)
tree
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commitdiff
2015-06-04
gmungoc
toString method added to aid viewing in the debugger
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
tree
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commitdiff
2015-06-04
gmungoc
JAL-1743 View Chain sub-menu now being populated
tree
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commitdiff
2015-06-04
gmungoc
JAL-1753 statusPanel added (for ProgressBar); 'Fit...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1753 ChimeraViewFrame hosts its own ProgressBar
tree
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commitdiff
2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
tree
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commitdiff
2015-06-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
tree
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commitdiff
2015-06-04
tcofoegbu
clean up
tree
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commitdiff
2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1756 bug-fix
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1641 updated json schema to make it more generic...
tree
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commitdiff
2015-06-02
tcofoegbu
JAL-1641 applet build fix
tree
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commitdiff
2015-06-01
Jim Procter
JAL-1370 group and alignment reference sequences are...
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1703 added tooltip hints to components of the Selec...
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1734 updated progress bar messages
tree
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commitdiff
2015-05-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-29
tcofoegbu
JAL-1748 house keeping
tree
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commitdiff
2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-29
gmungoc
JAL-1753 declare field with interface type; check for...
tree
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commitdiff
2015-05-29
Jim Procter
Merge branch 'JAL-1755_npe_groupconsensus' into develop
tree
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commitdiff
2015-05-29
Jim Procter
JAL-1755 fix for NPE when setting up temporary variables
tree
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commitdiff
2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-29
gmungoc
JAL-1753 duplicated code refactored to new class Progre...
tree
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commitdiff
2015-05-29
tcofoegbu
JAL-1748 and employ preprocessing routine when return...
tree
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commitdiff
2015-05-29
tcofoegbu
validate PDB selections on mouse release event
tree
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commitdiff
2015-05-28
tcofoegbu
JAL-1700 made PDB service error mechanism more user...
tree
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commitdiff
2015-05-28
tcofoegbu
JAL-1751 provided method to overide isCellEditable...
tree
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commitdiff
2015-05-28
tcofoegbu
JAL-1749 reinstated the ability to view RNA structures
tree
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commitdiff
2015-05-28
tcofoegbu
JAL-1740 minor house keeping
tree
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commitdiff
2015-05-27
tcofoegbu
Removed redundant classes and dependencies pulled in...
tree
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commitdiff
2015-05-27
tcofoegbu
Merge branch 'features/JAL-1740_Decoup-BioJS' into...
tree
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commitdiff
2015-05-27
tcofoegbu
JAL-1740 updated synch codes to use a git repo rather...
features/JAL-1740_Decoup-BioJS
tree
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commitdiff
2015-05-26
tcofoegbu
JAL-1627 bug fix to remove wierd space in Sequence...
tree
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commitdiff
2015-05-25
tcofoegbu
build fix
tree
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commitdiff
2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745 improvement to retreive already downloaded...
tree
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commitdiff
2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
tree
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commitdiff
2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1739 added svid - serial version id to hold version...
tree
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commitdiff
2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-20
gmungoc
JAL-796 JAL-1652 better implementation (key binding...
tree
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commitdiff
2015-05-20
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
tree
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commitdiff
2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1541 Modified BioJs exporter to take advantage...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
tree
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commitdiff
2015-05-18
gmungoc
JAL-1652 Escape key now closes Find dialog
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
tree
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commitdiff
2015-05-15
gmungoc
JAL-1737 ignore non-positional annotations for display
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 added test for regex actually used; include...
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main methods converted to JUnit
tree
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commitdiff
2015-05-13
gmungoc
JAL-1575 no-cache headers added to (empty) rest response
tree
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commitdiff
2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
tree
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commitdiff
2015-05-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
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