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sequence groups carry their own conservation and consensus annotation rows
[jalview.git] / src /
2009-01-08 jprocterfix broken parsing of non-positional features in GFF... tree | commitdiff
2009-01-08 jprocterstructure ids are not IDs, but simply references tree | commitdiff
2009-01-08 jprocterrefactor tree | commitdiff
2009-01-07 jprocterensure that the DAS sequence source checkbox is checked... tree | commitdiff
2009-01-07 jproctercheck for features on the retrieved sequences tree | commitdiff
2009-01-07 jprocterrefactor tree | commitdiff
2009-01-07 jprocteradded higher level method to enable the display of... tree | commitdiff
2008-12-19 jprocterjustify cannot be undone - commented out menu items... tree | commitdiff
2008-12-19 jprocterexperimental: sort by feature UI in feature settings... tree | commitdiff
2008-12-19 jprocternew sort by length method, justify edit menu entries... tree | commitdiff
2008-12-19 jproctercatch null pointer exception when no colourscheme is... tree | commitdiff
2008-12-19 jproctersimple transformation of feature types like dbref and... tree | commitdiff
2008-12-19 jproctertodo tree | commitdiff
2008-12-19 jprocterwsdbfetch parameter change again (uniprotkb is dbname... tree | commitdiff
2008-12-19 jprocteravoid null pointer exception when no features visible tree | commitdiff
2008-12-19 jprocteravoid null pointer exception when groupName is not set tree | commitdiff
2008-12-19 jprocterleft and right justify method tree | commitdiff
2008-12-19 jproctersort by length tree | commitdiff
2008-12-15 jprocteradded (and enabled) switch to store gff source string... tree | commitdiff
2008-12-15 jproctertemporary fix and note about null feature group mucking... tree | commitdiff
2008-12-15 jprocterwarning for failed parsing of newick strings tree | commitdiff
2008-12-15 jprocternew callback handler allowing threads that request... tree | commitdiff
2008-12-15 jprocterstructureState element to structure view Id is a many... tree | commitdiff
2008-12-08 jprocterDAS feature scores are parsed into floats on sequence... tree | commitdiff
2008-12-08 jprocteroutput average score to stdout tree | commitdiff
2008-12-08 jprocterdisplay feature score in tooltip tree | commitdiff
2008-12-08 jprocterexperimental buttons for sort on score/density and... tree | commitdiff
2008-12-08 jprocternew sort functions for ordering sequence by annotated... tree | commitdiff
2008-12-05 jproctersupport for multiple accession retrieval from a databas... tree | commitdiff
2008-12-04 jprocteradded local das sequence source CLI and documentation tree | commitdiff
2008-12-04 jprocterfetch database references for all EBI db + selected... tree | commitdiff
2008-12-04 jproctersequence fetchers generated for local das sequence... tree | commitdiff
2008-12-04 jprocterdas source browser uses local source method from jalvie... tree | commitdiff
2008-12-04 jprocterallow sequence source to be specified as sequence:mydas... tree | commitdiff
2008-12-04 jprocterlocal das source properties string constants and routin... tree | commitdiff
2008-12-04 jprocterproperly catch exceptions from querying server with... tree | commitdiff
2008-12-04 jprocterminimise exceptions for bad uniprot ids tree | commitdiff
2008-12-04 jprocterselect source by implementation class tree | commitdiff
2008-12-04 jprocterfix null pointer exception for sources which don't... tree | commitdiff
2008-12-04 jprocterclarity of tree menu calculation widget name tree | commitdiff
2008-12-01 jproctermatch case switch should work for both sequence ID... tree | commitdiff
2008-11-12 jprocterrefactored to propery separate addToDocument,addFromDoc... tree | commitdiff
2008-11-12 jprocternew viewport IDs and jalview XML storage/sync in vamsas... tree | commitdiff
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl... tree | commitdiff
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl... tree | commitdiff
2008-11-12 jprocterselection sending tree | commitdiff
2008-11-12 jprocternew ID constructor and selection sending tree | commitdiff
2008-11-12 jprocternew constructors for setting IDs tree | commitdiff
2008-11-12 jprocternew window discovery and alignment view navigation... tree | commitdiff
2008-11-12 jprocterjar inputstream provider enabling multiple jar entries... tree | commitdiff
2008-11-12 jprocterautomatic scrolling switch tree | commitdiff
2008-11-12 jprocterautomatic scrolling option added to view tree | commitdiff
2008-11-12 jprocterjdk1.2 compatibility tree | commitdiff
2008-11-12 jprocterminor translation bug tree | commitdiff
2008-11-12 jprocterjavadoc tree | commitdiff
2008-11-12 jprocterjalview XML schema update for 2.4.1 (or 2.5?) introduci... tree | commitdiff
2008-11-12 jprocternew listener/sender for selection events tree | commitdiff
2008-11-12 jproctergracefully translate ambigous nucleotides as 'X' tree | commitdiff
2008-11-12 jprocterbugfix to safely deal with server exception resulting... tree | commitdiff
2008-11-12 jprocteradded todo regarding import of GFF2 key=value attributes tree | commitdiff
2008-11-12 jprocteravoid exception if search returns valid object but... tree | commitdiff
2008-11-12 jprocternew copy constructor and intersect method tree | commitdiff
2008-11-12 jprocterinvolvesSequence to check if searchResults intersect... tree | commitdiff
2008-11-12 jprocterjavadoc and new method to get alignment sequence index... tree | commitdiff
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query... tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterbeginning of implementation of new properties for hide... tree | commitdiff
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... tree | commitdiff
2008-11-04 jprocterapplication specific validIOformat method tree | commitdiff
2008-09-24 jprocterfixed sequence associated annotation reading bug where... tree | commitdiff
2008-09-16 jprocterjava 1.1 compatibility tree | commitdiff
2008-09-16 jprocterfix exception raised when JNet concise files with no... tree | commitdiff
2008-09-09 jprocterlinks associated with non-positional features do not... tree | commitdiff
2008-09-09 jproctershow non-positional features with same code as positona... tree | commitdiff
2008-09-09 jprocterrefactored feature tooltip generation code to static... tree | commitdiff
2008-09-09 jprocternon-positional features are displayed with additional... tree | commitdiff
2008-09-09 jproctertooltip contains non-positional features and popup... tree | commitdiff
2008-09-09 jproctermake URL links from description string when link is... tree | commitdiff
2008-09-08 jprocterview settings in view submenu and user preferences... tree | commitdiff
2008-09-08 jprocterintroduced and commented out code for generating URLs... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-27 jprocterno newline after licence comment tree | commitdiff
2008-08-26 jprocterupdate Jpred3 service referenec tree | commitdiff
2008-08-26 jprocterallow '|' to be entered in URL text box and added regex... tree | commitdiff
2008-08-26 jprocterset title of viewer frame after file has been loaded... tree | commitdiff
2008-08-26 jprocterfuture bug fix todo tree | commitdiff
2008-08-26 jprocternew thread for initting of DBRefFetcher with latest... tree | commitdiff
2008-08-26 jprocteruses shared singleton from jalview.gui.SequenceFetcher... tree | commitdiff
2008-08-26 jprocteradded singleton access method to retrieve the latest... tree | commitdiff
2008-08-26 jprocterbugfix todo for the 'edit sequence' command tree | commitdiff
2008-08-26 jproctertooltip for fetch db refs and more generic regex for... tree | commitdiff
2008-08-26 jprocterpdb xrefs added as dbrefs and as PDB file links tree | commitdiff
2008-08-26 jprocterensure successive matches to a regex have distinct... tree | commitdiff
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation... tree | commitdiff
2008-08-20 jproctertooltip displays formatted annotation row description... tree | commitdiff
2008-08-19 jprocterbeginning of fix for embl/cds/highlighting IO in https... tree | commitdiff
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure... tree | commitdiff
2008-08-19 jprocterbetter check for molecule type when identifying interna... tree | commitdiff
2008-08-19 jprocterregex links for launching URL from single click on... tree | commitdiff
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