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JAL-3033 updated classlist for loading the example file (jim's kitchensink corefile)
[jalview.git] / src /
2018-12-04 gmungocJAL-3032 set radio buttons transparent tree | commitdiff
2018-12-04 hansonrx,y switch in FeatureIcon tree | commitdiff
2018-12-03 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-12-03 gmungocJAL-3168 include feature type in colour chooser dialog... tree | commitdiff
2018-12-03 gmungocJAL-3167 end cell editing on cancel in colour chooser tree | commitdiff
2018-12-03 gmungocJAL-3058 provide cancel callback method for colour... tree | commitdiff
2018-12-01 hansonradding jaxbtest.jvx and directing JalviewJS2.java to... tree | commitdiff
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu tree | commitdiff
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-11-27 gmungocJAL-3163 only log missing message keys once each tree | commitdiff
2018-11-26 gmungocJAL-3162 only allow start <= end while modifying bug/JAL-3162featureStartLtEnd tree | commitdiff
2018-11-26 gmungocJAL-3032 make JS properties conditional on Jalview... tree | commitdiff
2018-11-26 hansonradds swingjs.overflow.hidden client property tree | commitdiff
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange tree | commitdiff
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 javadoc, don’t darken white when shading resid... tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation tree | commitdiff
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag tree | commitdiff
2018-11-19 gmungocJAL-3032 J2S variant for painting JTable tree | commitdiff
2018-11-19 gmungocJAL-3032 reinstate methods now available in SwingJS tree | commitdiff
2018-11-18 hansonradds JS hook for JTable repaint tree | commitdiff
2018-11-18 hansonrBH - suggestion to turn off column dragging in Java... tree | commitdiff
2018-11-16 gmungocJAL-2069 wider dialog so all fields show! tree | commitdiff
2018-11-16 hansonrfixing several GD# -- see green colors tree | commitdiff
2018-11-15 gmungocJAL-3063 remove commented code, suppress debug output tree | commitdiff
2018-11-15 gmungocJAL-3032 JAL-2344 project files are 'identifiable' tree | commitdiff
2018-11-14 gmungocJAL-3032 don't throw Exception to signal chain not... tree | commitdiff
2018-11-14 gmungocJAL-3152 holding patch for colour Jmol by sequence tree | commitdiff
2018-11-12 gmungocJAL-3076 JalviewJS requires lower case content-type... tree | commitdiff
2018-11-11 hansonradds explicit AJAX-allowed tree | commitdiff
2018-11-11 hansonradds static declaration of AJAX-readable domains tree | commitdiff
2018-11-09 Jim ProcterJAL-3127 polished setColor after review tree | commitdiff
2018-11-08 gmungocJAL-3116 better unmarshalling of EMBL/Uniprot XML tree | commitdiff
2018-11-08 gmungocJAL-3048 use JalviewJS compatible JalviewFileChooser... tree | commitdiff
2018-11-08 gmungocJAL-3048 override showOpenDialog with JalviewJS compati... tree | commitdiff
2018-11-07 hansonrJAL-3026-JAL-3063 JAXB unmarshaller fix tree | commitdiff
2018-11-07 hansonrJAL-3026-JAL-3063 session test files tree | commitdiff
2018-11-06 hansonrJAXB marshalling by JavaScript successfully unmarshalle... tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-11-02 hansonrMarshalling produces valid ZIP file. Unmarshalling... tree | commitdiff
2018-11-02 hansonrJAXB update site + transpiler tree | commitdiff
2018-11-01 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into tree | commitdiff
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... tree | commitdiff
2018-11-01 gmungocMerge branch 'feature/JAL-3144noJTree' into tree | commitdiff
2018-11-01 gmungocMerge branch 'Jalview-BH/JAL-3026' into tree | commitdiff
2018-11-01 gmungocJAL-3048 JAL-3056 reinstate save/load project, colour... Jalview-BH/JAL-3026 tree | commitdiff
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... tree | commitdiff
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree tree | commitdiff
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... tree | commitdiff
2018-10-31 gmungocJAL-3026 skip unsupported HttpURLConnection methods... tree | commitdiff
2018-10-30 gmungocJAL-3144 left aligned looks better (and works in Jalvie... tree | commitdiff
2018-10-30 gmungocJAL-3144 query URL corrected tree | commitdiff
2018-10-30 gmungocJAL-3144 close SequenceFetcher before opening PDB/Unipr... tree | commitdiff
2018-10-30 hansonrJAL-3026-JAL-3063 adds binary ext to J2S tree | commitdiff
2018-10-30 gmungocJAL-3144 spelling, Javadoc, abstract method for JalviewJS tree | commitdiff
2018-10-30 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... tree | commitdiff
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree tree | commitdiff
2018-10-29 gmungocJAL-3038 add ActionListener and FocusListener to SwingJ... tree | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... tree | commitdiff
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, tree | commitdiff
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-23 Ben SoaresBackupFilter and other unfinished business tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Tidying tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-17 hansonrnonfunctional testing directory - just so I can see... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 always look up sequence ID colour from view... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... tree | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 Colour sequences by ID - need to check that... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg tree | commitdiff
2018-10-08 gmungocJAL-1244 editSequence extract method refactoring tree | commitdiff
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap tree | commitdiff
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... tree | commitdiff
2018-10-04 gmungocJAL-1244 no status message (yet) for locked edit of... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message for insert/delete gaps on singl... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message while dragging a stretch group tree | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... tree | commitdiff
2018-10-04 gmungocJAL-3093 unit tests, no mouse action over left/right... tree | commitdiff
2018-10-03 gmungocJAL-3093 tweaks to code and test for 3px gap above... tree | commitdiff
2018-10-02 gmungocJAL-3093 unit tests for SeqPanel.findMousePosition tree | commitdiff
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