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JAL-2795 added error catching for invalid identifier
[jalview.git]
/
src
/
2017-10-10
kiramt
Merge remote-tracking branch 'origin/features/JAL-2609f...
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge seems to work
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 wrap public progress bar methods as InvokeLate...
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 formatting
tree
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commitdiff
2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
tree
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commitdiff
2017-10-10
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-10
kjvdheide
Start of programmatically creating Aptx trees
tree
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commitdiff
2017-10-10
Jim Procter
Merge branch 'features/JAL-2523httpRetries' into develop
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge partial merge
tree
|
commitdiff
2017-10-09
kjvdheide
fixed incorrect panel title
tree
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commitdiff
2017-10-09
kjvdheide
Start of creating tree nodes for Aptx
tree
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commitdiff
2017-10-09
kjvdheide
Fully separated tree GUI from calculation
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-09
gmungoc
JAL-2523 basic sleep and retry (3 times) on 429 respons...
features/JAL-2523httpRetries
tree
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commitdiff
2017-10-09
gmungoc
JAL-2523 convenience method to get model organisms
tree
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commitdiff
2017-10-09
Jim Procter
JAL-2446 remove duplicate code from pulled up method.
tree
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commitdiff
2017-10-07
kjvdheide
Renaming
tree
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commitdiff
2017-10-06
kjvdheide
Start of creating the objects Archaeopteryx needs
tree
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commitdiff
2017-10-05
Jim Procter
JAL-2757 reset textbox after a non HTTP 200 response
tree
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commitdiff
2017-10-05
kjvdheide
Blank interfaces added
tree
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commitdiff
2017-10-04
gmungoc
JAL-2523 start of refactoring...
tree
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commitdiff
2017-10-03
kjvdheide
Proper copyright dating added
tree
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commitdiff
2017-10-03
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-03
kjvdheide
Kept copyright test to just the new classes
tree
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commitdiff
2017-10-03
kjvdheide
Copyright test
tree
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commitdiff
2017-10-02
gmungoc
JAL-2525 lookup transcript features by Ontology
tree
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commitdiff
2017-09-29
kjvdheide
Begin separation of GUI and tree calculation logic
origin/spikes/koen
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
feature/JAL-2745ebiHttps
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 stderr rather than stdout for unexpected HTTP...
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 stderr rather than stdout for unexpected HTTP...
tree
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commitdiff
2017-09-29
gmungoc
JAL-2745 update www.ebi.ac.uk to https
tree
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commitdiff
2017-09-28
gmungoc
JAL-2745 update www.ebi.ac.uk to https
tree
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commitdiff
2017-09-28
gmungoc
JAL-2036 set menus after fully loading AlignFrame
tree
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commitdiff
2017-09-27
kjvanderheide
proof of concept for passing tree data to archaeopteryx
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 fixed
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
tree
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commitdiff
2017-09-22
kiramt
JAL-2739 Fix ported to 2.10.3
tree
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commitdiff
2017-09-18
gmungoc
Merge remote-tracking branch 'origin/patch/JAL-2732...
tree
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commitdiff
2017-09-18
gmungoc
JAL-2728 fine tuned initial split of split frame view
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 ensure we don’t regress on JAL-20 - we always...
patch/JAL-2732
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 javadoc
tree
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commitdiff
2017-09-15
Jim Procter
JAL-2733 redraw after changing the memory status displa...
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 JAL-1900 preserve the original DesktopManager...
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1900 JAL-1625 back out OSX specific double buffer...
tree
|
commitdiff
2017-09-15
Jim Procter
JAL-1551 standard code formatting
tree
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commitdiff
2017-09-15
Jim Procter
JAL-2732 force a redraw after resize/drag to clear...
tree
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commitdiff
2017-09-15
gmungoc
JAL-2728 use right denominator for min/max ratio calcul...
bug/JAL-2728splitFrameDivision
tree
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commitdiff
2017-09-15
gmungoc
JAL-2728 limit divider to ensure seqs visible (wip!)
tree
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commitdiff
2017-09-15
gmungoc
JAL-741 add tooltip to feature group checkbox
tree
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commitdiff
2017-09-14
gmungoc
JAL-2727 null more fields in AlignmentViewport.dispose...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2727 method to check if PCAPanel thread is working
tree
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commitdiff
2017-09-13
gmungoc
JAL-2727 null additional references on close
tree
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commitdiff
2017-09-12
gmungoc
Merge branch 'bug/JAL-2721fastPaintNPE' into develop
tree
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commitdiff
2017-09-12
gmungoc
Revert "JAL-2727 null hconsensus, "
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 null hconsensus,
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
tree
|
commitdiff
2017-09-07
gmungoc
JAL-2511 invalidate scale panel holder on font change...
tree
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commitdiff
2017-09-07
gmungoc
JAL-2511 invalidate scale panel holder on font change...
bug/JAL-2511idAlignment
tree
|
commitdiff
2017-09-06
Jim Procter
JAL-2587 makes sure idWidthAdjuster is resized when...
tree
|
commitdiff
2017-09-06
Jim Procter
JAL-2587 makes sure idWidthAdjuster is resized when...
tree
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commitdiff
2017-09-06
gmungoc
JAL-2721 no fastPaint if img has been nulled by fontCha...
tree
|
commitdiff
2017-09-06
gmungoc
JAL-2721 no fastPaint if img has been nulled by fontCha...
bug/JAL-2721fastPaintNPE
tree
|
commitdiff
2017-09-06
Jim Procter
Merge branch 'feature/JAL-2587' into releases/Release_2...
tree
|
commitdiff
2017-09-06
Jim Procter
Merge branch 'releases/Release_2_10_2b1_Branch' into...
tree
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commitdiff
2017-09-06
Jim Procter
JAL-2724 patch to fix ClassCastException - method shoul...
tree
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commitdiff
2017-09-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2722'...
portforward/JAL-2675_2102b1to2103
tree
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commitdiff
2017-09-06
kiramt
JAL-2587 Removed dissolve
tree
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commitdiff
2017-09-05
gmungoc
JAL-2665 check for null selection group image
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'bug/JAL-2722' into releases/Release_2_10_...
tree
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commitdiff
2017-09-05
gmungoc
JAL-2665 check for null selection group image
tree
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commitdiff
2017-09-05
kiramt
JAL-2722 Reinstate allGroups value setting in getResidu...
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'bug/JAL-2665-2.10.3' into portforward...
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2675 source license
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'bug/JAL-2673' into documentation/JAL...
tree
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commitdiff
2017-09-04
kiramt
JAL-2673 turn off update to running flag from scrollUp...
bug/JAL-2673
tree
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commitdiff
2017-09-04
kiramt
JAL-2673 Attempt to stop infinite scrolling etc
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2527 move default colours for applet / application...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'bug/JAL-2704gapColourFading' into documen...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'releases/Release_2_10_2b1_Branch' of...
tree
|
commitdiff
2017-09-04
gmungoc
JAL-2617 unit tests for CDS + stop codon, CDS with...
bug/JAL-2617mappedStopCodon
tree
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commitdiff
2017-09-04
kiramt
JAL-2611 reinstated missed commit
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2691_nomultimermapping' into...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2665-2.10.2b' into documentation...
bug/JAL-2673_mergewithproblem
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2527' into documentation...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'features/JAL-2681_duplicatecrossrefs...
tree
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commitdiff
2017-09-01
gmungoc
JAL-2617 omit stop codon from synthesized CDS sequence
tree
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commitdiff
next