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Move tree property change to treePanel
[jalview.git]
/
src
/
2005-08-18
jprocter
Jpred to JNet
tree
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commitdiff
2005-08-18
amwaterhouse
Proceed with upperCase residue
Release_2_03
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commitdiff
2005-08-18
jprocter
various case sensitivity bugs fixed in residue comparis...
tree
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commitdiff
2005-08-18
amwaterhouse
Use aa index for aboveThreshold as well as colour index
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commitdiff
2005-08-17
jprocter
Client threads for discovered web services.
tree
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commitdiff
2005-08-17
jprocter
GUI modifications for service discovery.
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commitdiff
2005-08-17
jprocter
Gui Modifications for Service Discovery.
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commitdiff
2005-08-17
jprocter
<No Comment Entered>
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commitdiff
2005-08-17
amwaterhouse
Read in version from build details file in applet jar
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commitdiff
2005-08-17
amwaterhouse
Capitalise menus
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commitdiff
2005-08-17
jprocter
Maintain list of webservices and query any Service...
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commitdiff
2005-08-17
jprocter
Simple Registry Service stubs
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commitdiff
2005-08-17
jprocter
Fixed basic name to sequence ID matching (bug dragonfly...
tree
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commitdiff
2005-08-17
amwaterhouse
No basicDirectoryModel on the Mac
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commitdiff
2005-08-17
amwaterhouse
Set size for mac users
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commitdiff
2005-08-17
amwaterhouse
Error reply is kept separate from file type
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commitdiff
2005-08-17
amwaterhouse
Check default colour is not null
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commitdiff
2005-08-17
amwaterhouse
Remove user colour menu item
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commitdiff
2005-08-17
amwaterhouse
Check default >0, not <1
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commitdiff
2005-08-17
amwaterhouse
Conservation group colour saved
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commitdiff
2005-08-17
amwaterhouse
Add SRS as default
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commitdiff
2005-08-17
amwaterhouse
Return white userColourScheme, not null colourscheme
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commitdiff
2005-08-17
amwaterhouse
Use getDefault for exampleFile
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commitdiff
2005-08-17
amwaterhouse
Rebuilt with new schema
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commitdiff
2005-08-17
amwaterhouse
Put basic file chooser test in try catch loop
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commitdiff
2005-08-17
amwaterhouse
Scheme name added
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commitdiff
2005-08-17
amwaterhouse
User colours have scheme name
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commitdiff
2005-08-17
amwaterhouse
User colours
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commitdiff
2005-08-17
amwaterhouse
No score colour scheme, group colours saved if conserva...
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commitdiff
2005-08-17
amwaterhouse
Calculation - consensus
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commitdiff
2005-08-17
amwaterhouse
updateUserColourMenu
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commitdiff
2005-08-17
amwaterhouse
Discover user colours
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commitdiff
2005-08-16
amwaterhouse
Remove redundant imports
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commitdiff
2005-08-15
amwaterhouse
Jalview Version:
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commitdiff
2005-08-15
amwaterhouse
Output java version, os version on startup
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commitdiff
2005-08-15
amwaterhouse
Remove null check
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commitdiff
2005-08-15
amwaterhouse
Use default fileChooser for now
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commitdiff
2005-08-15
amwaterhouse
super.setconsensus
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commitdiff
2005-08-15
amwaterhouse
Percentage precalculated in aafrequency
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commitdiff
2005-08-15
amwaterhouse
isGap slightly more efficient
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commitdiff
2005-08-15
amwaterhouse
Add taylor to default colour check
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commitdiff
2005-08-15
amwaterhouse
Hashtable now in array, not vector
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commitdiff
2005-08-15
amwaterhouse
IgnoreGapsConsensus
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commitdiff
2005-08-15
amwaterhouse
Dont color Checking... red
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commitdiff
2005-08-15
amwaterhouse
Declare variables outside loops
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commitdiff
2005-08-15
amwaterhouse
Calculate gap and nogap ratio here
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commitdiff
2005-08-12
jprocter
fixed leafMapping bug for Id's like SequenceX (where...
tree
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commitdiff
2005-08-09
amwaterhouse
Cache.getDefault
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commitdiff
2005-08-09
amwaterhouse
Proxy server, default browser, multiple links added
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commitdiff
2005-08-09
amwaterhouse
cache.getDefault
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commitdiff
2005-08-09
amwaterhouse
Try/catch loading default icons
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commitdiff
2005-08-09
amwaterhouse
Splash screen is repainted when checking latest version
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commitdiff
2005-08-09
amwaterhouse
Handle multiple url links
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commitdiff
2005-08-09
amwaterhouse
Can give a name to new browser window
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commitdiff
2005-08-09
amwaterhouse
Properties file is used in preference to viewport/cache...
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commitdiff
2005-08-09
amwaterhouse
Edit/add/delete a sequence link
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commitdiff
2005-08-09
amwaterhouse
Applet handles multiple sequence links
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commitdiff
2005-08-03
amwaterhouse
Fix for user entering number in search window
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commitdiff
2005-08-03
amwaterhouse
Version 2.02
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commitdiff
2005-08-03
amwaterhouse
1 & -1
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commitdiff
2005-08-03
amwaterhouse
Trees aren't save in headless state in this version
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commitdiff
2005-08-03
amwaterhouse
Loading thread moved to io.FileLoader
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commitdiff
2005-08-03
amwaterhouse
Use Container to get fontMetrics
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commitdiff
2005-08-03
amwaterhouse
FileLoading removed from desktop
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commitdiff
2005-08-03
amwaterhouse
Can run headless=true
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commitdiff
2005-08-02
amwaterhouse
Use font.getName, not font.getFontName
tree
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commitdiff
2005-07-29
amwaterhouse
Remove ref to ServletGUI
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commitdiff
2005-07-29
amwaterhouse
use 1 & -1 if start/end not specified
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commitdiff
2005-07-29
amwaterhouse
if endRes <1, calc the endRes
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commitdiff
2005-07-29
amwaterhouse
Correct label for end res in copy
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commitdiff
2005-07-18
amwaterhouse
Copy seq ordering bug fixed
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commitdiff
2005-07-11
amwaterhouse
Version changes
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commitdiff
2005-07-11
amwaterhouse
Must check if group.sequences are null in remove gaps
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commitdiff
2005-07-11
amwaterhouse
Consume if enter pressed
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commitdiff
2005-07-11
amwaterhouse
Listen for return key
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commitdiff
2005-07-11
amwaterhouse
check groupsize is non zero
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commitdiff
2005-07-11
amwaterhouse
setIconImage
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commitdiff
2005-07-11
amwaterhouse
Add test case if code version not found
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commitdiff
2005-07-11
amwaterhouse
Version changes
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commitdiff
2005-07-11
amwaterhouse
this.installIcons
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commitdiff
2005-07-11
amwaterhouse
Release and build date methods changed
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commitdiff
2005-07-07
amwaterhouse
Runs if no files to open and -nodisplay is not used
tree
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commitdiff
2005-07-07
amwaterhouse
press del to cut
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commitdiff
2005-07-07
amwaterhouse
delete markers from start to end
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commitdiff
2005-07-07
amwaterhouse
Remove all gaps must check jSize
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commitdiff
2005-07-06
amwaterhouse
Remove group if sequences are null
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commitdiff
2005-07-06
amwaterhouse
Help file url changed
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commitdiff
2005-07-06
amwaterhouse
dont add null group
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commitdiff
2005-07-06
amwaterhouse
Sequence to Uppercase before checksum
tree
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
tree
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commitdiff
2005-06-30
amwaterhouse
Not used in Jalview
tree
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commitdiff
2005-06-16
jprocter
renamed menu for jPred to Jnet.
tree
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commitdiff
2005-06-16
jprocter
better clustalw reference
tree
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commitdiff
2005-06-16
amwaterhouse
dont add sequence twice to new group
tree
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commitdiff
2005-06-16
amwaterhouse
Sort Groups modified
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commitdiff
2005-06-16
amwaterhouse
dont convert to uppercase
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commitdiff
2005-06-16
amwaterhouse
textarea replaces textfield - can cut and paste sequenc...
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commitdiff
2005-06-16
amwaterhouse
remove gaps applies to selected area
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commitdiff
2005-06-15
amwaterhouse
use .jalview.uniprot.xml
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commitdiff
2005-06-15
amwaterhouse
Check colours not null
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commitdiff
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