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JAL-3010 offer 'apply to all {parent SO term} features' where applicable
[jalview.git]
/
src
/
2019-01-29
gmungoc
JAL-3143 format alleles array for feature description
tree
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commitdiff
2019-01-28
Ben Soares
JAL-3141 improvement on BackupFilenameParts filename...
tree
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commitdiff
2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Added a '.fa' to filename examples
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Change of label
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Removed border around example filenames in...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 New layout and wording of Backups Preferences...
tree
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commitdiff
2019-01-24
gmungoc
JAL-3018 Ensembl version updated to 9.0
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
tree
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commitdiff
2019-01-23
Ben Soares
JAL-3141 Added Presets options in the Backups Preferenc...
tree
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commitdiff
2019-01-23
gmungoc
JAL-3063 correct handling of absent choice element...
tree
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commitdiff
2019-01-22
Ben Soares
JAL-3141 Fixed what happens when suffix template has...
tree
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commitdiff
2019-01-21
Ben Soares
JAL-3141 Rejigged the Preferences tab and changed some...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 removing diagnostic output
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Fixed example filenames in Preferences pane...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Re-added some changes in Jalview2XML missed...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor
tree
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commitdiff
2019-01-18
gmungoc
JAL-3143 'id' not 'ID' attribute drives generation...
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2019-01-16
Ben Soares
JAL-3141 Remove no longer used exampleLabel
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2019-01-15
Jim Procter
JAL-1767 refactor associated view logic to public metho...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Forgot this file, sorry!
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Added a 'Save Project as...' File menu item...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Made more constants
tree
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commitdiff
2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 removed redundant method to tests
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into features/pca_j...
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2019-01-09
Jim Procter
JAL-3063 remove stale JAXB binding POJO
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Added i18n for the example filenames in Prefer...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 forgot to add this file after extracting the...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Made one more suggested change from code review
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some more suggested changes from code...
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
tree
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commitdiff
2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
feature/JAL-3180colourAnnotationMenu
tree
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commitdiff
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testab...
feature/JAL-3181linkOrdering
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 simplified code and test
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-21
gmungoc
JAL-1767 minimise local variable scope
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crossha...
bug/JAL-2621
tree
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commitdiff
2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
tree
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commitdiff
2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-12-10
gmungoc
JAL-1421 added type to List and Vector
feature/JAL-3169cancelOverwrite
tree
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commitdiff
2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
tree
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commitdiff
2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
tree
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commitdiff
2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
tree
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commitdiff
2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
tree
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commitdiff
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
tree
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commitdiff
2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
tree
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commitdiff
2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
bug/JAL-3161annotationTooltipRange
tree
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commitdiff
2018-11-20
Jim Procter
JAL-3127 Sequence ID Colour and nominal spanish translation
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 javadoc, don’t darken white when shading resid...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3156 JAL-3127 code tidy
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
tree
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commitdiff
2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
bug/JAL-3154tableColumnDrag
tree
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commitdiff
2018-11-09
Jim Procter
JAL-3127 polished setColor after review
tree
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commitdiff
2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
tree
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
tree
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commitdiff
2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
tree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-23
Ben Soares
BackupFilter and other unfinished business
tree
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commitdiff
2018-10-23
gmungoc
JAL-3139 check group visibility when removing 'redundan...
bug/JAL-3139colocatedFeatures
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Tidying
tree
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commitdiff
2018-10-19
Ben Soares
JAL-3141 Backup files being created with default suffix...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 always look up sequence ID colour from view...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
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