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patch for JAL-760
[jalview.git]
/
src
/
2011-02-04
jprocter
patch for JAL-760
tree
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commitdiff
2011-02-04
jprocter
group associated annotation and logos JAL-516 JAL-759
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commitdiff
2011-02-04
jprocter
adjustable annotation panel height and vertical scrollb...
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
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commitdiff
2011-01-21
jprocter
search result highlighting and scrolling and some patch...
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display JAL-469
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display
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commitdiff
2011-01-21
jprocter
logic bug for auto scrolling
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753
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commitdiff
2011-01-21
jprocter
ensure source is rarely null
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
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commitdiff
2011-01-18
jprocter
patch for JAL-695 - need to test if this is observed...
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commitdiff
2011-01-18
jprocter
patch for JAL-695
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commitdiff
2011-01-18
jprocter
javadoc
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commitdiff
2011-01-18
jprocter
javadoc
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commitdiff
2011-01-18
jprocter
avoid creating lots of identical search results. patch...
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commitdiff
2011-01-18
jprocter
removed securityException caused by accessing class...
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commitdiff
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
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commitdiff
2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
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commitdiff
2011-01-17
jprocter
warn user that no JS callbacks will work by default...
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commitdiff
2011-01-17
jprocter
need to own lock to notify
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commitdiff
2011-01-17
jprocter
need to own lock to notify
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commitdiff
2011-01-17
jprocter
avoid 1.5 specific methods
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commitdiff
2011-01-17
jprocter
revised default separator string expression to avoid...
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commitdiff
2011-01-17
jprocter
allow debug messages to be output before jscallback...
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commitdiff
2011-01-17
jprocter
refactored javascript callback to parent class.
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commitdiff
2011-01-17
jprocter
eliminate utf8 compilation errors
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commitdiff
2011-01-17
jprocter
use local reference for current target frame as set...
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commitdiff
2011-01-17
jprocter
JAL-750 and JAL-451
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commitdiff
2011-01-13
jprocter
output jsexception message
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commitdiff
2011-01-12
jprocter
handlers with no specified alignframe broadcast events...
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commitdiff
2011-01-12
jprocter
1.1 compat
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commitdiff
2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
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commitdiff
2011-01-12
jprocter
selection should be sent after refresh happens
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commitdiff
2011-01-12
jprocter
javadoc
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commitdiff
2011-01-12
jprocter
java side javascript callback enactors JAL-469
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commitdiff
2011-01-10
jprocter
patch for JAL-740
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commitdiff
2011-01-07
jprocter
refactored dropFile allowing known information to be...
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commitdiff
2011-01-07
jprocter
bulk associate pdb files dropped on to alignment :...
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commitdiff
2011-01-07
jprocter
refactored guts of pdb file association code
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commitdiff
2011-01-07
jprocter
check for all http protocols
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commitdiff
2011-01-07
jprocter
refactored to use SequenceI
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commitdiff
2011-01-06
jprocter
JAL-730
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commitdiff
2011-01-05
jprocter
more robust calculation of partition from possibly...
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commitdiff
2011-01-05
jprocter
inline submission of alignment with correct crlf
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commitdiff
2011-01-05
jprocter
ensure group props are recalculated before alignment...
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commitdiff
2011-01-05
jprocter
revised shmr service
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commitdiff
2011-01-05
jprocter
todo and ensure old annotation/groups are removed befor...
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commitdiff
2011-01-05
jprocter
todo
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commitdiff
2011-01-05
jprocter
exception reporting for bad URLs
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
2011-01-05
jprocter
propagated groups trimmed to correct region on viscontig
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commitdiff
2011-01-05
jprocter
graphThreshold not being copied by constructor
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commitdiff
2010-12-17
jprocter
first publicly accessible test of JAL-724
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commitdiff
2010-12-17
jprocter
JAL-715 and JAL-724
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commitdiff
2010-12-17
jprocter
JAL-715
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commitdiff
2010-12-17
jprocter
refined modification test
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commitdiff
2010-12-17
jprocter
refactored gap insert/visible view modification code...
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commitdiff
2010-12-17
jprocter
adjust start and end of intersecting group relative...
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commitdiff
2010-12-17
jprocter
1.1 compat
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commitdiff
2010-12-17
jprocter
1.1 compat
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commitdiff
2010-12-17
jprocter
refactored gap insert/visible view modification code...
tree
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commitdiff
2010-12-17
jprocter
javadoc
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commitdiff
2010-12-15
jprocter
incremental refinement of results parsing
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commitdiff
2010-12-15
jprocter
allow client to check if the original alignment data...
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commitdiff
2010-12-15
jprocter
javadoc
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commitdiff
2010-12-15
jprocter
update modification state flag according to parsing...
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commitdiff
2010-12-15
jprocter
getters and modification state flag
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commitdiff
2010-12-15
jprocter
more accurate determination of annotation modification
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commitdiff
2010-12-15
jprocter
refactored key calc for hash to separate function
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commitdiff
2010-12-14
jprocter
1.1 compat
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commitdiff
2010-12-14
jprocter
1.1 compat
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commitdiff
2010-12-14
jprocter
more fixes and extension to allow return data types...
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commitdiff
2010-12-14
jprocter
render of html job logs and link opening JAL-720
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commitdiff
2010-12-14
jprocter
more efficient set/append
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commitdiff
2010-12-14
jprocter
method to recover sources from packed stream
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commitdiff
2010-12-14
jprocter
always provide reference to hashtable so feature settin...
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commitdiff
2010-12-14
jprocter
JAL-725 - show progress when opening URL in browser
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commitdiff
2010-12-14
jprocter
JAL-724
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commitdiff
2010-12-14
jprocter
refactored and patched for JAL-721
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commitdiff
2010-12-14
jprocter
refactored and patched for JAL-721
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commitdiff
2010-12-10
jprocter
mime types and handler
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commitdiff
2010-12-10
jprocter
javadoc
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commitdiff
2010-12-10
jprocter
remove implicit non-1.1 compatible call
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commitdiff
2010-12-09
jprocter
fix case when groups overlap - ensure groups are non...
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commitdiff
2010-12-09
jprocter
java 1.1 patches
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commitdiff
2010-12-09
jprocter
java 1.1 patches
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commitdiff
2010-12-09
jprocter
initial implementation of Rest client framework (JAL...
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commitdiff
2010-12-09
jprocter
dataIn.ready() is not a test of data source validity!
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commitdiff
2010-12-09
jprocter
initial list of mime-type bindings to jalview data...
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commitdiff
2010-12-09
jprocter
initial implementation for JAL-718
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commitdiff
2010-12-09
jprocter
refactored and added methods for getting richer Alignme...
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commitdiff
2010-12-09
jprocter
new methods and test code for JAL-716
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commitdiff
2010-12-09
jprocter
new constructor and refactored methods for intersecting...
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commitdiff
2010-12-09
jprocter
new methods for testing for/storing selection/group...
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commitdiff
2010-12-09
jprocter
javadoc and additional convenience method for JAL-716
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commitdiff
2010-12-02
jprocter
refactored visible contig/gap map array intersection...
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commitdiff
2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
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commitdiff
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