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JAL-1957 JAL-1479 updated SIFTS user docs
[jalview.git]
/
src
/
2016-05-27
tcofoegbu
JAL-1823 improvement to all chain code specification...
tree
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commitdiff
2016-05-27
tcofoegbu
JAL-1911 further improvement to bugfix - do not save...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1942 small tidy (formatting, explict imports, typed...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1911 correct typo in field name
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 improvement to bugfix - do not save i18n text...
tree
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commitdiff
2016-05-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-26
Jim Procter
JAL-2121 refactor todo
tree
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commitdiff
2016-05-26
gmungoc
JAL-391 add reverse / complement to command history...
tree
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commitdiff
2016-05-26
gmungoc
JAL-2035 relocated a comment
tree
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commitdiff
2016-05-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
tree
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commitdiff
2016-05-26
gmungoc
JAL-1993 open sequence fetcher tree on 'fetch sequences'
tree
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commitdiff
2016-05-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-26
gmungoc
JAL-1797 non-case-sensitive counting of residues /...
tree
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commitdiff
2016-05-26
gmungoc
JAL-2113 additions to embl_mapping.xml / data models...
features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
tree
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commitdiff
2016-05-25
gmungoc
JAL-2110 wip CrossRefs rewrite of CrossRef
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 remove spaces in sequence from unmarshalling...
tree
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commitdiff
2016-05-23
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2114 save 'raw' ENA location as a sequence feature...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 tidy variable naming / javadoc
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 accept "<123..178" or "123..>178" format
tree
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commitdiff
2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 added single-locus case and more error tests
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 parser + tests for GenBank location descriptors
tree
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commitdiff
2016-05-18
tcofoegbu
merge
tree
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commitdiff
2016-05-18
tcofoegbu
JAL-1563 smarter support for advanced querying of Unipr...
tree
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commitdiff
2016-05-18
gmungoc
JAL-2049 set sequence feature group to "Jalview" for...
tree
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commitdiff
2016-05-18
gmungoc
JAL-2049 use HGVS notation for variant on protein residue
tree
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commitdiff
2016-05-17
tcofoegbu
JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
tree
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commitdiff
2016-05-17
tcofoegbu
merge
tree
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commitdiff
2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
tree
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commitdiff
2016-05-12
gmungoc
JAL-2104 format tooltips to wrap correctly
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
tcofoegbu
merge
tree
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commitdiff
2016-05-09
tcofoegbu
JAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
tree
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commitdiff
2016-05-09
tcofoegbu
JAL-2102 implemented improvement to round FTS's numberi...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2098 identify feature file with "<" in feature...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 fix javadoc
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 unused variables
tree
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commitdiff
2016-05-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 reuse refactored scale code for wrappe...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 centre triangles on hidden column vertical...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 optimisation
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 triangles shown below in jvdesktop unwrapped...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 patch off-by-one for pathological gap case
tree
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commitdiff
2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
tree
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commitdiff
2016-05-04
gmungoc
JAL-2092 hide columns with/without feature
tree
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commitdiff
2016-05-04
gmungoc
Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
tree
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commitdiff
2016-05-04
tcofoegbu
merge
tree
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commitdiff
2016-05-04
tcofoegbu
JAL-1563 JAL-2091 Added total result count to Uniprot...
tree
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commitdiff
2016-05-04
gmungoc
JAL-2090 removed test for Java > 1.1 to enable transparency
tree
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commitdiff
2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
tree
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commitdiff
2016-05-03
tcofoegbu
JAL-2091 disable pagination buttons during initialisation
tree
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commitdiff
2016-05-03
tcofoegbu
JAL-1563 JAL-2091 Added generic pagination for FTS...
tree
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commitdiff
2016-05-03
gmungoc
JAL-2068 minimised jalview.gui imports, test for remove...
tree
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commitdiff
2016-05-02
tcofoegbu
JAL-1563 Fixed Uniprot FTS result-set count error,...
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-29
tcofoegbu
merge
tree
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commitdiff
2016-04-29
tcofoegbu
JAL-1563 house keeping/updated API doc for new method...
merge/JAL-1563_uniprot-free-text-search
tree
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commitdiff
2016-04-29
tcofoegbu
JAL-1563 Further increased swing timer for search textf...
tree
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commitdiff
2016-04-29
gmungoc
JAL-2051 better checking of retrieved / duplicated...
tree
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commitdiff
2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 scale origin relative to start of reference...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-966 JAL-1553 todo: remove UI components from Colum...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a seque...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-04-28
tcofoegbu
JAL-1563 increased swing timer for search action from...
tree
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commitdiff
2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
tree
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commitdiff
2016-04-28
tcofoegbu
JAL-1563 Implemented hack to make table both scrollable...
tree
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commitdiff
2016-04-27
tcofoegbu
JAL-1563 Added Id (Uniprot Id) to the dynamic column...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-192 fix off-by-one for alignment ruler with no...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-192 show reference sequence position and residue...
tree
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commitdiff
2016-04-27
tcofoegbu
JAL-1563 Added fix to prevent swing timer from reinitia...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-1366 JAL-2086 reinstate bolding of reference sequence
tree
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commitdiff
2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
tree
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commitdiff
2016-04-27
tcofoegbu
JAL-1563 Modified Uniprot data column configurations...
tree
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commitdiff
2016-04-27
tcofoegbu
re-enabled new uniprot sequence fetcher on spike branch
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 fix broken cherry-pick conflict merge
tree
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commitdiff
2016-04-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 use new service to retrieve Rfam Seed alignment
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 disable RFAM(Full) source until we can retriev...
tree
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commitdiff
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