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JAL-1667 JAL-1668 JAL-1553 help docs update
[jalview.git]
/
src
/
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
tree
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commitdiff
2015-05-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
tree
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commitdiff
2015-05-12
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_1641 added unit test and minor house keeping
tree
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commitdiff
2015-05-11
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
tree
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commitdiff
2015-05-09
unknown
JAL-1601 bugfix on previous commit
tree
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commitdiff
2015-05-09
unknown
JAL-1601 patch burial display for prediction loaded...
tree
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commitdiff
2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1731 fix JPred4 citation in legacy client code
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial represent...
tree
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commitdiff
2015-05-06
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 broadcast empty selection (to clear selection)
features/JAL-1725chimeraListener
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 limit thread pool size; prefix /jalview to...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1700 Improved the error handling mechanism for...
tree
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commitdiff
2015-05-01
tcofoegbu
Merge branch 'bug/JAL-1726_External-integration-test_PD...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1726 Added external integration test for PDB Rest API
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 refining 'copy format from' as applied to...
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 unused fields removed
tree
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commitdiff
2015-04-30
Mungo Carstairs
JAL-845 reduced height to allow for Desktop decorators...
tree
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commitdiff
2015-04-30
tcofoegbu
Merge branch 'bug/JAL-1717_make-pbd-id-case_insensitive...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1690 preserve scaling in New View, synch id width...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1715 implemented selection validation for the new...
tree
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commitdiff
2015-04-27
tcofoegbu
Merge branch 'features/JAL-1714_specify-mulitple-id_PDB...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1714 improved the new PDB Sequence fetcher by enabl...
tree
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commitdiff
2015-04-27
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'features/JAL-1711_PDB-specify-chain'...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1710, JAL-1711 Bug fix for exception thrown when...
tree
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commitdiff
2015-04-24
gmungoc
JAL-1691 prevent propagation of scrolling on mouseover...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'bug/JAL-1707_retrieve-pdb-structure-for...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1707 bug fix - also search using sequence name
tree
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commitdiff
2015-04-23
gmungoc
JAL-1702 corrected check for 'no colours selected'
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 distinguish between 'font too small' and ...
tree
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commitdiff
2015-04-23
gmungoc
JAL-1681 create mappings before AlignFrame to ensure...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 set split frame divider safely for eXpand Views
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 fixed to correctly restore the last dialog...
tree
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commitdiff
2015-04-22
gmungoc
JAL-845 fix SplitFrame sizing on eXpand Views
tree
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commitdiff
2015-04-22
gmungoc
JAL-1690 fix NPE on Cancel when not in split frame
tree
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commitdiff
2015-04-21
gmungoc
JAL-1693 mappings added back to the original alignment
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1697 added ablity to select/view cached structures...
bug/JAL-1697_browse-local-structures
tree
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commitdiff
2015-04-17
tcofoegbu
Merge branch 'bug/JAL-1698_Append-Structures' into...
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1698 bug fix to enable addition of a single structu...
bug/JAL-1698_Append-Structures
tree
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commitdiff
2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'bug/Jal-1696_disable-pdb_id-field-setting...
tree
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commitdiff
2015-04-14
tcofoegbu
JAL-1696 disabled editing of PDB Id field from settings
bug/Jal-1696_disable-pdb_id-field-settings
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1681 work around ConcurrentModificationException...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 new property ENABLE_SPLIT_FRAME
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 parameter controls whether SplitFrame is enabled
tree
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commitdiff
2015-04-08
gmungoc
JAL-1270 protection against NullPointer when run as...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 defensive check for null
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
tree
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commitdiff
2015-03-30
gmungoc
JAL-1264 remove broken applet build dependencies
tree
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
tree
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commitdiff
2015-03-27
tcofoegbu
JAL-1667 updated the collection type for searchSummaryF...
tree
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commitdiff
2015-03-27
tcofoegbu
merge commit
tree
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commitdiff
2015-03-26
tcofoegbu
JAL-1667 updated parseJsonExceptionString method in...
features/JAL-1667_PDBe_Search_API
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-26
gmungoc
JAL-1688 compiler warnings removed
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1667 clean up commented codes in PopupMenu.java...
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1668 Tab for summary config, auto refresh after...
tree
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commitdiff
2015-03-19
tcofoegbu
JAL-1668 finally clean up
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 house keeping
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 added PDBDocFieldPreference for configuring...
tree
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commitdiff
2015-03-16
Charles Ofoegbu
JAL-1668 added validation for manual entry of pdb struc...
tree
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commitdiff
2015-03-15
Charles Ofoegbu
JAL-1667 updated test and internationalization messages
tree
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commitdiff
2015-03-09
Jim Procter
JAL-1565 loading a concise file causes insertions to...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1667 refactoring to support JAL-1668
tree
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commitdiff
2015-03-04
Charles Ofoegbu
JAL-1668 First version JAL-1668
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2015-02-27
Jim Procter
JAL-1678 - patch to make sure we only compare positions...
tree
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commitdiff
2015-02-27
Jim Procter
fix for JAL-1678
tree
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commitdiff
2015-02-26
Charles Ofoegbu
JAL-1667 PDBe Search Interface implementation
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 pass the columnselection rather then selected...
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commitdiff
2015-02-12
Jim Procter
JAL-1350 cloned method and tested equivalence for using...
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commitdiff
2015-02-12
Jim Procter
JAL-1115 switch to lists in SequenceGroup
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commitdiff
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