git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-3725 helper methods for computing mapped feature range overlap
[jalview.git]
/
src
/
2021-10-01
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2021-10-01
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
|
commitdiff
2021-10-01
Jim Procter
JAL-3616 show name of structure viewer in ‘new view...
tree
|
commitdiff
2021-10-01
Jim Procter
JAL-3616 explicit configure external viewer config
tree
|
commitdiff
2021-10-01
Jim Procter
JAL-3829 fetch 3D beacons now started by clicking butto...
tree
|
commitdiff
2021-10-01
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
|
commitdiff
2021-09-30
Ben Soares
JAL-1260 Added .gbk to GenBank extensions. Added GenBa...
tree
|
commitdiff
2021-09-30
gmungoc
JAL-3371 more fine-grained slider; set Param slider...
tree
|
commitdiff
2021-09-29
Ben Soares
JAL-3885 Made the database JComboBox have StringPair...
tree
|
commitdiff
2021-09-29
Jim Procter
JAL-3884 squish alarming but harmless errors when unipr...
tree
|
commitdiff
2021-09-29
Jim Procter
JAL-3881 split on any nonalphanumeric symbol (plus...
tree
|
commitdiff
2021-09-29
Jim Procter
JAL-3829 report when 3d-beacons doesn’t provide any...
tree
|
commitdiff
2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
tree
|
commitdiff
2021-09-24
Jim Procter
JAL-3829 right click to view popup menu to show link...
tree
|
commitdiff
2021-09-24
Jim Procter
JAL-3829 abstract essential TDB metadata from the user...
tree
|
commitdiff
2021-09-23
Jim Procter
JAL-3821 less ambiguous base class name for EMBL and...
tree
|
commitdiff
2021-09-23
Jim Procter
JAL-3821 ported to refactored FlatFile parser
tree
|
commitdiff
2021-09-23
Jim Procter
JAL-3692 JAL-3861 remove extra call to .parse() so...
tree
|
commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
|
commitdiff
2021-09-21
Jim Procter
Merge branch 'doc/JAL-3746_Release_2_11_2' into develop
tree
|
commitdiff
2021-09-21
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
tree
|
commitdiff
2021-09-21
Jim Procter
JAL-3829 - callback finessing - leave DBRefFetcher...
tree
|
commitdiff
2021-09-21
Jim Procter
JAL-3829 prefix PDBe filters with PDBe to make clear...
tree
|
commitdiff
2021-09-21
Jim Procter
JAL-3829 alternative UX: need to select 3d-beacons...
tree
|
commitdiff
2021-09-21
Jim Procter
JAL-3829 ignore the fake ID generated when a PDB format...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 tests need to wait for dialog to be closed...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 TDBeacons fetcher needs a sequence with at...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 throw the exception even if it has no message
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 ensure nulls are not wildcards when retrieving...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 do better at detecting structure type, prompt...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 make sure structure data type reflects actual...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 store 3db metadata on PDBEntry so it can be...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 allow PDBEntry with file and ID with mismatchi...
tree
|
commitdiff
2021-09-17
Ben Soares
Merge branch 'merge/develop_JAL-1260' into develop
tree
|
commitdiff
2021-09-17
Ben Soares
JAL-1260 rudimentary parsing of LOCUS line to at least...
tree
|
commitdiff
2021-09-17
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-3079 JAL-3055 remember to reset font transform...
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 refactored multi-line qualifier separators
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 file formats and IdentifyFile updates for...
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 refactored GenBank (and EMBL) flat file parser
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-1260 FileFormat entry for EMBL/GENBANK: TODO: creat...
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-2226 transfer chain annotation when calcId, label...
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-2226 new method to search for annotation matching...
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-3829 belt and braces check to make sure there is...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3779 apply properties to all groups with given...
tree
|
commitdiff
2021-09-16
Ben Soares
JAL-3774 combined changes from bug/JAL-3774_splitFrameF...
tree
|
commitdiff
2021-09-16
Jim Procter
Merge branch 'develop' into doc/JAL-3746_Release_2_11_2
tree
|
commitdiff
2021-09-16
Ben Soares
JAL-3739 (combined) commits from feature/JAL-3739_useFo...
tree
|
commitdiff
2021-09-16
Jim Procter
JAL-3794 X and N are counted as DNA characters, but...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 more consistent parameter naming
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 helper method reinstated to avoid code duplication
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom/To revised with tests; unused...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 extra check that VCF feature is fully mappable...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 debugged and working (but not tidied) locateIn...
tree
|
commitdiff
2021-09-16
Ben Soares
JAL-3761 listToArray became rangeListToArray
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom2 work in progress commit
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3761 failing test, formatting, method renamed
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3788 synchronize concurrent findColour() and alignm...
tree
|
commitdiff
2021-09-15
Ben Soares
JAL-3818 formatting
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3818 process Jmol callbacks in AWT thread
tree
|
commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
|
commitdiff
2021-09-15
Jim Procter
Merge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride...
tree
|
commitdiff
2021-09-15
Jim Procter
JAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
tree
|
commitdiff
2021-09-15
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
tree
|
commitdiff
2021-09-15
Jim Procter
JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
tree
|
commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
|
commitdiff
2021-09-14
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2021-09-14
Ben Soares
JAL-3521 Change grouped Jalview windows on linux taskba...
tree
|
commitdiff
2021-09-14
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3551 - doc tweak
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3855 JAL-3829 better checks on PDB or mmCIF file...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 JAL-3855 moved routing for retrieving structur...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 JAL-3855 ignore case when detecting alphafold ID
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3855 detect an alphafold model and import its tempe...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 move mock query and responses to files
tree
|
commitdiff
2021-09-14
Ben Soares
JAL-2422 Also look in ~/Applications for ChimeraX on...
tree
|
commitdiff
2021-09-14
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 3d-beacons doesn’t work as a sequence source...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 avoid sending rubbish to PDBe search api
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 some providers don’t provide model quality...
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 allow multiple URL mocks and include P01308...
tree
|
commitdiff
2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
tree
|
commitdiff
2021-09-14
Ben Soares
JAL-2422 Fixed URL encoding of REST calls (broken paths...
tree
|
commitdiff
2021-09-13
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2021-09-13
Ben Soares
JAL-2422 Fixed URL encoding of REST calls (broken paths...
tree
|
commitdiff
2021-09-13
Ben Soares
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
|
commitdiff
2021-09-13
Ben Soares
JAL-2422 Added linux rpm and deb install locations...
tree
|
commitdiff
2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
tree
|
commitdiff
2021-09-12
Jim Procter
JAL-3829 JalviewJS workarounds/patches
tree
|
commitdiff
2021-09-11
Jim Procter
JAL-3829 ensure tests use mocked service - proper excep...
tree
|
commitdiff
2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 insert title for structures from PDBe
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 update for v1.0 3d-beacons api spec
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 point at production 3d-beacons url
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 refactor and JAL-3391 JAL-2935 first stab...
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 allow client-side selection of structures...
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
tree
|
commitdiff
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
tree
|
commitdiff
next