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Merge branch 'forpush/JAL-674_dssp' into develop
[jalview.git] / src /
2014-10-21 Jim ProcterJAL-1551 reinstate missing import tree | commitdiff
2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge tree | commitdiff
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 source formatting tree | commitdiff
2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in datase... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static tree | commitdiff
2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequenc... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 typo tree | commitdiff
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing... tree | commitdiff
2014-10-10 gmungocJAL-1481 wrap tooltip in html tree | commitdiff
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label) tree | commitdiff
2014-10-10 gmungocJAL-1264 reverted (removed added method) tree | commitdiff
2014-10-09 Jim Procterpatch fixes JAL-1558 tree | commitdiff
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into tree | commitdiff
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about... tree | commitdiff
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double... tree | commitdiff
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list tree | commitdiff
2014-10-07 Jim ProcterJAL-1151 source tidy tree | commitdiff
2014-10-07 gmungocJAL-1264 wip tree | commitdiff
2014-10-07 gmungocJAL-1554 handle left-then-right click on sequence id tree | commitdiff
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... tree | commitdiff
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... tree | commitdiff
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... tree | commitdiff
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... tree | commitdiff
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector tree | commitdiff
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... tree | commitdiff
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message... tree | commitdiff
2014-10-03 gmungocJAL-1264 javadoc update tree | commitdiff
2014-10-03 gmungocJAL-1264 show/hide annotations; JAL-1481 Find tooltip tree | commitdiff
2014-10-03 gmungocJAL-1506 delete all warning; JAL-1264 show/hide annotations tree | commitdiff
2014-10-03 gmungocJAL-1264 refactored show/hide annotation types includin... tree | commitdiff
2014-10-03 gmungocJAL-1481 search expression validation tree | commitdiff
2014-10-03 gmungocJAL-1506 correct exit on close align frame tree | commitdiff
2014-10-03 gmungocJAL-914 don't open help window twice tree | commitdiff
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_... tree | commitdiff
2014-09-27 darolmarJAL-1355 tree | commitdiff
2014-09-26 darolmarJAL-1355 tree | commitdiff
2014-09-25 gmungocJAL-1264 tidy up use of MouseListener for showHideAnnot... tree | commitdiff
2014-09-25 gmungocJAL-1264 alternative (popup menu) way to show/hide... tree | commitdiff
2014-09-24 gmungocJAL-1264 further refactoring of panel + unit tests tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-23 gmungocJAL-1264 first cut of panel for annotation show/hide... tree | commitdiff
2014-09-19 darolmarJAL-1355 tree | commitdiff
2014-09-19 darolmarJAL-1355 tree | commitdiff
2014-09-18 gmungocMerge branch 'JAL-1360_Branch' into Release_2_8_2_Branch tree | commitdiff
2014-09-18 gmungocJAL-1360 Javadoc, Vector replaced with ArrayList, code... tree | commitdiff
2014-09-18 gmungocJAL-1360 Javadoc/JUnit tree | commitdiff
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class tree | commitdiff
2014-09-17 gmungocCorrect colour for text when colour set tree | commitdiff
2014-09-17 gmungocJAL-1360 refactored for consistent lighter/darker for tree | commitdiff
2014-09-17 gmungocJAL-1360 workaround for user defined colours display... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... tree | commitdiff
2014-09-12 j.procter@dundee... formatting and organise imports tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 fix: pass selected region to jalview.io via... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 fix imports tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1333 allow reuse of existing chimera for new or... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs tree | commitdiff
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present tree | commitdiff
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1379 new look JPred results tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-07-08 j.procter@dundee... JAL-1333 allow reuse of existing viewers (of a specifie... tree | commitdiff
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement tree | commitdiff
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... tree | commitdiff
2014-07-03 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' into features/JAL... tree | commitdiff
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into develop tree | commitdiff
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch tree | commitdiff
2014-07-03 Jim Procterfixes JAL-1530 tree | commitdiff
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra... tree | commitdiff
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