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Make sure annots are alignment width
[jalview.git]
/
src
/
2007-01-31
amwaterhouse
Unique name for new group and treegroup
tree
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commitdiff
2007-01-31
amwaterhouse
Adjust features when cutting and pasting
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commitdiff
2007-01-31
amwaterhouse
make new dataset seq if residues deleted
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commitdiff
2007-01-31
amwaterhouse
copy feature: check for null values
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commitdiff
2007-01-30
amwaterhouse
Check valid residues in ss
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commitdiff
2007-01-30
amwaterhouse
Check seqs in group exist in this alignment
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commitdiff
2007-01-30
amwaterhouse
Any character non aa or nucleotide is a space
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commitdiff
2007-01-30
amwaterhouse
moved painting routine
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commitdiff
2007-01-30
amwaterhouse
consensusColouring never used
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commitdiff
2007-01-30
amwaterhouse
Draw helices correctly
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commitdiff
2007-01-30
amwaterhouse
Use util toHexString
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commitdiff
2007-01-30
amwaterhouse
Output groups in annotation file
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commitdiff
2007-01-29
amwaterhouse
Dont clear graphics g before drawing the image
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commitdiff
2007-01-29
amwaterhouse
Image for labels, stops flickering
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commitdiff
2007-01-29
amwaterhouse
New view copies annotations across
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commitdiff
2007-01-29
amwaterhouse
Tooltips for group names, descriptions
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commitdiff
2007-01-29
amwaterhouse
Description added
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commitdiff
2007-01-29
amwaterhouse
SequenceGroup parsing added to annotation file
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commitdiff
2007-01-29
amwaterhouse
ID_ITALICS option in preferences
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commitdiff
2007-01-29
amwaterhouse
scaleAbove, left and right set when tab selection changes
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commitdiff
2007-01-29
amwaterhouse
Marios annotation bug fixed
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commitdiff
2007-01-26
amwaterhouse
AnnotationId is hashcode of object
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commitdiff
2007-01-26
amwaterhouse
Only set the sequence oncecvs diff datamodel/Alignment...
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commitdiff
2007-01-26
amwaterhouse
Adjusts annotations for sequence edits
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commitdiff
2007-01-26
amwaterhouse
If its null, set tip empty
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commitdiff
2007-01-25
amwaterhouse
Command takes alignment, not gapChar
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commitdiff
2007-01-25
amwaterhouse
Annotations move when full alignment edited
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commitdiff
2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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commitdiff
2007-01-25
amwaterhouse
Remove unneccessary lines
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commitdiff
2007-01-25
amwaterhouse
AlignmentAnnotations require id
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commitdiff
2007-01-25
amwaterhouse
Allow for hidden columns
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commitdiff
2007-01-25
amwaterhouse
Only output visible annotations
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commitdiff
2007-01-25
amwaterhouse
load/get Annotation
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commitdiff
2007-01-25
amwaterhouse
Remove unnecessary line
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commitdiff
2007-01-25
amwaterhouse
Output annotations
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commitdiff
2007-01-25
amwaterhouse
1.1 enabled
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commitdiff
2007-01-25
jprocter
reinstating class implementation.
tree
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commitdiff
2007-01-25
jprocter
checks for irreflexive mapping in main tester
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commitdiff
2007-01-24
amwaterhouse
Conservation etc have autoCalculated flag set true
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commitdiff
2007-01-24
amwaterhouse
AdjustAnnotations needs position, number and insert
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commitdiff
2007-01-24
amwaterhouse
This constructor is never called
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commitdiff
2007-01-24
amwaterhouse
Features output for javascript
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commitdiff
2007-01-24
amwaterhouse
output now takes alignment, not just sequences
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commitdiff
2007-01-24
amwaterhouse
Extension to fastaFile for myhits
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commitdiff
2007-01-24
jprocter
refactored to use jalview.analysis.Finder for searching...
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commitdiff
2007-01-24
jprocter
kkv change
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commitdiff
2007-01-24
jprocter
Map arbitrary series of non-overlapping integer interva...
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commitdiff
2007-01-24
amwaterhouse
Page setup added
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commitdiff
2007-01-23
amwaterhouse
boolean for internal copies
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commitdiff
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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commitdiff
2007-01-23
jprocter
refactoring (added seqIndex/resIndex state for incremen...
tree
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commitdiff
2007-01-23
jprocter
refactored search algorithm from gui classes
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commitdiff
2007-01-23
jprocter
transfer resnum features now returns features (could...
tree
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commitdiff
2007-01-19
jprocter
reoganization of PDB sequence fetching for sequence...
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commitdiff
2007-01-19
jprocter
PDBChain maintains reference to dataset of sequences...
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commitdiff
2007-01-19
jprocter
datasetSequence derive method and some checks
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commitdiff
2007-01-19
amwaterhouse
export features/annotations not for import
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commitdiff
2007-01-19
amwaterhouse
Applet can output and load annotations, features
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commitdiff
2007-01-19
amwaterhouse
Neeed to know protocol for annotation loading
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commitdiff
2007-01-19
amwaterhouse
Need to know protocol to load anntotations
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commitdiff
2007-01-19
jprocter
javadoc
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commitdiff
2007-01-19
jprocter
added sequence feature copy constructor.
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commitdiff
2007-01-18
jprocter
transfer and update of sequenceFeatures for associated...
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commitdiff
2007-01-18
jprocter
random ';'
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commitdiff
2007-01-18
jprocter
transfer and update of sequenceFeatures for associated...
tree
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commitdiff
2007-01-18
jprocter
fixed last-residue bug and added sequence feature creat...
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commitdiff
2007-01-18
jprocter
added resNum+insCode string field for truly unambiguous...
tree
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commitdiff
2007-01-18
amwaterhouse
Add the last sequence before annotations
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commitdiff
2007-01-18
amwaterhouse
Take scrollOffset into account
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commitdiff
2007-01-18
amwaterhouse
Tool tip for annotation description
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commitdiff
2007-01-18
amwaterhouse
Set description on copy
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commitdiff
2007-01-18
amwaterhouse
Set tooltip
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commitdiff
2007-01-18
amwaterhouse
1.1 enabled
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commitdiff
2007-01-18
amwaterhouse
put vamsas bit back in
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commitdiff
2007-01-18
amwaterhouse
File Parsing returns Alignments, not Sequence[]
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commitdiff
2007-01-18
amwaterhouse
Is secondary structure label modified
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commitdiff
2007-01-18
amwaterhouse
Display description
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commitdiff
2007-01-18
amwaterhouse
Descriptions can be added to annotations
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commitdiff
2007-01-17
amwaterhouse
Edit name/description added to applet
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commitdiff
2007-01-17
amwaterhouse
Fit to Window bug fixed
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commitdiff
2007-01-17
jprocter
made atom attributes public (rather than put in get...
tree
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commitdiff
2007-01-17
amwaterhouse
Dont set the font of alignFrameMenubarcvs update applet...
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commitdiff
2007-01-04
amwaterhouse
Send new sequences when firing alignment changed
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commitdiff
2007-01-04
amwaterhouse
Reads in anything following seq id as a description
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commitdiff
2007-01-04
amwaterhouse
HEADER and ATOM must be position 0
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commitdiff
2006-12-21
jprocter
description from vamsas sequence and file type change
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commitdiff
2006-12-21
amwaterhouse
check on sequence length
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commitdiff
2006-12-21
amwaterhouse
getSequenceAsString
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commitdiff
2006-12-21
amwaterhouse
getSequenceAsString
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commitdiff
2006-12-21
amwaterhouse
remove unnecessary import
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commitdiff
2006-12-21
jprocter
type change
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commitdiff
2006-12-19
amwaterhouse
org.vamsas is now uk.ac.vamsas
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commitdiff
2006-12-19
amwaterhouse
description may be null
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commitdiff
2006-12-14
amwaterhouse
set sequence_ref alignment
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commitdiff
2006-12-14
amwaterhouse
Watch out for - symbol lin jnet files
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commitdiff
2006-12-14
amwaterhouse
Are the labels all secondary Strutures? are the display...
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commitdiff
2006-12-14
amwaterhouse
one less cast
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commitdiff
2006-12-11
jprocter
fixed introduced bug (doh)
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commitdiff
2006-12-11
jprocter
clarified help documentation for annotation file format...
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commitdiff
2006-12-11
amwaterhouse
ensure lastSeq is refreshed if new feature added
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commitdiff
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