2017-02-21 |
gmungoc | JAL-2416 more validation in ScoreMatrix constructor |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2416 replaced dependency on ResidueProperties with... |
tree | commitdiff |
2017-02-20 |
Jim Procter | Merge branch 'features/JAL-2379pcaMemory' into develop |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2416 public constant for space gap character |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2416 remove unused pep, dna alphabets, unused metho... |
tree | commitdiff |
2017-02-18 |
gmungoc | JAL-2416 better encapsulated 'constants' for BLOSUM62... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 BLOSUM62 removed from ResidueProperties |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 removed DNA and PAM250 matrices from ResiduePr... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 scoreMatrices removed from ResidueProperties |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2413 extracted new method SetUtils.countDisjunction() |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2423 refactored method to build panel title for... |
tree | commitdiff |
2017-02-17 |
kiramt | JAL-2388 Incomplete unit tests |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 SeqSpace PCA now provided as an alternative... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 allow space in score matrix name |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 order score models by order of addition rather... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2403 redundant 'implements' removed |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2403 extract method refactoring of FeatureScoreMode... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2403 constants for "NJ", "AV" |
tree | commitdiff |
2017-02-17 |
kiramt | JAL-2421 Fix to alignment panel scroll values, and... |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu |
tree | commitdiff |
2017-02-15 |
Jim Procter | fix for JAL-2419 - don’t trash the current selection |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 don’t search twice for containing group to... |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 new contains methods for seq and seq,apos |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 javadoc - qualify that sequence argument to... |
tree | commitdiff |
2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
2017-02-14 |
gmungoc | JAL-2346 disable 'threshold min/max' when 'use original... |
tree | commitdiff |
2017-02-14 |
gmungoc | JAL-2346 remove refactored fields, fix test for above... |
tree | commitdiff |
2017-02-14 |
kiramt | JAL-2388 Removed unnecessary CommandListener interface... |
tree | commitdiff |
2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-2416 allow alphabet symbol (optional) in first... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
tree | commitdiff |
2017-02-10 |
gmungoc | JAL-2371 small move of code, typo correction |
tree | commitdiff |
2017-02-09 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove... |
tree | commitdiff |
2017-02-09 |
kiramt | JAL-2388 Initial refactor of OverviewPanel |
tree | commitdiff |
2017-02-09 |
Jim Procter | Merge branch 'develop' into features/JAL-2316 features/JAL-2316 |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2401 change 'Lower Case Colour' to checkbox with... |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2371 ensure some colour scheme (may be None) is... |
tree | commitdiff |
2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2371 skip upper-casing consensus as it already is |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2405 check for circular reference in SequenceGroup... |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2405 set initial selection group alignment context |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2405 enable nucleotide/peptide colour schemes in... |
tree | commitdiff |
2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored... |
tree | commitdiff |
2017-02-08 |
gmungoc | JAL-2401 fix for NPE on selectedButtons, tweak for... |
tree | commitdiff |
2017-02-08 |
gmungoc | JAL-2399 JAL-2400 tidy Text Colour wording, behaviour... |
tree | commitdiff |
2017-02-08 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-02-08 |
Jim Procter | JAL-2366 updated default URL to jalview.org/services... |
tree | commitdiff |
2017-02-07 |
Jim Procter | Merge branch 'features/JAL-2371collectionColourScheme... |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2401 Lower Case Colour toggleable, help text added |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2379 removed unused commented code |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2397 flag provided for 2.10.1 PCA gap calculation... |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2397 PCA gap cost uses last column of score matrix |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2398 corrected entry for C->R in Blosum62 matrix |
tree | commitdiff |
2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo() |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2371 commented code removed only |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2379 commented out code removed |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
tree | commitdiff |
2017-01-27 |
kiramt | JAL-2366 Removed unneeded setEnabled calls |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2360 corrected comment |
tree | commitdiff |
2017-01-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-26 |
kiramt | JAL-2316 Updated to use identifiers jalview service |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2380 code tidy after review |
tree | commitdiff |
2017-01-25 |
gmungoc | JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... |
tree | commitdiff |
2017-01-23 |
gmungoc | JAL-2379 made SparseMatrix.divide() so as to exactly... |
tree | commitdiff |
2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
tree | commitdiff |
2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2385 tweak to applet 'switch colour slider context' |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2385 update slider settings when switching slider... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2383 fixup from last merge |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2383 check for null, spelling |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consi... |
tree | commitdiff |
2017-01-20 |
gmungoc | JAL-2383 restore group conservation slider setting... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
tree | commitdiff |
2017-01-19 |
gmungoc | JAL-2370 corrected applet mouse drag, refactored into... |
tree | commitdiff |
2017-01-18 |
gmungoc | JAL-2228 removed ColumnCounterI, finessed recalc of... |
tree | commitdiff |
2017-01-18 |
gmungoc | JAL-2228 removed FeatureCounterI in favour of FeatureSe... |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-1933 update threshold on focus lost in text field features/JAL-2295setChimeraAttributes |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-2370 fix bug when hiding a range including two... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
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