JAL-3130 This commit concentrates on the Mac OS X DMG app bundle, ensuring only one...
[jalview.git] / src /
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG...
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -...
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ...
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with...
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules...
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all...
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in...
2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-12 gmungocJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into...
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored
2019-03-11 gmungocMerge branch 'bug/JAL-3075' into develop
2019-03-08 gmungocJAL-3193 defensive trim of URL read from properties...
2019-03-08 gmungocJAL-3075 update column selection on mouse up after... bug/JAL-3075
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu...
2019-03-07 Ben SoaresJAL-3130 deprecation change preparation
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected
2019-03-07 Jim ProcterJAL-3127 set ‘updateStructures’ flag for viewports...
2019-03-07 gmungocJAL-2717 corrected i18n of colour scheme names
2019-03-07 gmungocMerge branch 'feature/JAL-3205symmetricCalc' into develop
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2019-03-06 gmungocJAL-3035 more das bits removed
2019-03-05 gmungocMerge branch 'bug/JAL-3201groupClustal' into develop
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a...
2019-03-05 gmungocMerge branch 'bug/JAL-2621' into develop
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3141_Messa...
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi...
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-914multipl...
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2814f...
2019-03-05 Ben SoaresJAL-3141 Fixed inconsistent (changed) message labels... bug/JAL-3141_Messages_discrepancy_fix
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3002fastPa...
2019-03-05 gmungocJAL-3049 JAL-3032 tidy/i18n code, remove redundant...
2019-03-05 gmungocJAL-3049 redo (part of) commit 92bc328
2019-03-05 gmungocJAL-3054 small y-overlap of tooltip and cell leads...
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colour...
2019-03-05 gmungocJAL-3205 added a delta parameter to Matrix.equals() feature/JAL-3205symmetricCalc
2019-03-04 gmungocMerge branch 'bug/JAL-3072scrollThread' into merge...
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select...
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi...
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into...
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem...
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into...
2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into...
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'...
2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into...
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop
2019-03-01 gmungocJAL-3154 disable reorder columns before adding to viewport
2019-03-01 gmungocMerge branch 'bug/JAL-3154tableColumnDrag' into develop
2019-03-01 gmungocMerge branch 'bug/JAL-3161annotationTooltipRange' into...
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into...
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into...
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop
2019-03-01 gmungocJAL-3140 update for change to SequenceI api
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL...
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam...
2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop
2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop
2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into...
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge...
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b...
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
2019-02-26 gmungocJAL-3201 JAL-2386 don't pre-select 'apply to all groups'
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation
2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id...
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli...
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi...
2019-02-22 gmungocJAL-2738 don't set AF as feature score
2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete...
2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting...
2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files...
2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastM...
2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse...
2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box...
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile...
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox...
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser...
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC...
2019-01-29 gmungocJAL-3143 format alleles array for feature description
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename...
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an...
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples
2019-01-24 Ben SoaresJAL-3141 Change of label
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in...
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences...
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc...
2019-01-23 gmungocJAL-3063 correct handling of absent choice element...
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