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JAL-4369 invokeAndWait to avoid hang whilst calling getFiles if a Jmol redraw is...
[jalview.git]
/
src
/
2024-01-10
James Procter
JAL-4369 invokeAndWait to avoid hang whilst calling...
bug/JAL-4369_uniprot_in_jalviewJS
tree
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commitdiff
2024-01-10
James Procter
JAL-4369 uniprotkb - try to avoid another redirect...
tree
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commitdiff
2024-01-09
James Procter
JAL-4369 use rest.uniprot.org as fetch domain
tree
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commitdiff
2023-12-20
Ben Soares
JAL-4238 Marked where JalviewJS is hanging on 3DBeacons...
tree
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commitdiff
2023-12-20
Ben Soares
JAL-4059 Added some more Platform.addJ2SDirectDatabaseC...
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4059 Only run this once
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4059 Use namespaced query parameters in preference...
tree
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commitdiff
2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-2934proportionalScr...
bug/JAL-2934proportionalScrolling
tree
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commitdiff
2023-12-14
Ben Soares
JAL-4059 Improvement to launch indicator
tree
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commitdiff
2023-12-12
James Procter
JAL-4217 don’t try and export an image when Jmol is...
tree
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commitdiff
2023-12-12
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-12
James Procter
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
tree
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commitdiff
2023-12-12
James Procter
JAL-4217 close internal frame on the swing thread to...
tree
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commitdiff
2023-12-12
Ben Soares
JAL-4353 helper method and test for primary/secondary...
tree
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commitdiff
2023-12-12
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 re-used random color code
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 Preserve the user given 'linkedId' with ArgVal...
tree
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commitdiff
2023-12-06
James Procter
Merge branch 'patch/JAL-840_clustalx_docs_fix' into...
tree
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commitdiff
2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 Add a 'random' colour to produce a random...
tree
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commitdiff
2023-12-05
Ben Soares
JAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
tree
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commitdiff
2023-12-04
Ben Soares
JAL-4059 Attempts to set JalviewJS desktop geometry...
tree
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commitdiff
2023-11-30
James Procter
JAL-4342 test and patch checking annotation csv export...
patch/JAL-4342_emptyannotationsexport
tree
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commitdiff
2023-11-30
James Procter
Patch fixes JAL-4165 - added to release notes JAL-4351
tree
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commitdiff
2023-11-30
Ben Soares
Merge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
tree
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commitdiff
2023-11-30
Ben Soares
JAL-4344 careful application of -Djava.awt.headless...
tree
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commitdiff
2023-11-29
Ben Soares
Merge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv...
tree
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commitdiff
2023-11-29
Ben Soares
JAL-4344 Some fixes of waiting blocks, and headless...
tree
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commitdiff
2023-11-27
Ben Soares
JAL-4238 minor errors fixed for JalviewJS structure...
tree
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commitdiff
2023-11-24
Ben Soares
JAL-4059 Allow form-created querystring style values...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 Storing important thisApplet information in...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 Made jalview.bin.JalviewJS to use new command...
tree
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commitdiff
2023-11-23
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 rename vars to j2s_ this and that for clarity
tree
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commitdiff
2023-11-22
Ben Soares
JAL-4059 Send bespoke Info hash parameters into jalview...
tree
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commitdiff
2023-11-22
James Procter
Merge branch 'patch/JAL-4345_pae_epas1_doubleclick...
tree
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commitdiff
2023-11-21
James Procter
JAL-4345 patch and release notes
patch/JAL-4345_pae_epas1_doubleclick
tree
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commitdiff
2023-11-21
Ben Soares
JAL-4238 an attempt to set JalviewJS desktop overflow...
tree
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commitdiff
2023-11-21
Ben Soares
JAL-4238 Changing visibility of locateInRange(int)...
tree
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commitdiff
2023-11-20
Ben Soares
JAL-4348 Add newer versions of Chimera and ChimeraX...
tree
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commitdiff
2023-11-20
James Procter
JAL-4343 patch for JAL-4347 uniprot non-pos feature...
tree
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commitdiff
2023-11-16
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-11-16
Ben Soares
JAL-4238 ignore thread.sleeps in jalviewjs. Added a...
tree
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commitdiff
2023-11-15
James Procter
Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
tree
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commitdiff
2023-11-15
James Procter
Merge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
tree
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commitdiff
2023-11-15
James Procter
JAL-4273 actually pass startSeq etc on to rendering...
tree
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commitdiff
2023-11-15
James Procter
JAL-4222 bail if we wait too long for Jmol to save...
patch/JAL-4222_100s_timeout_on_imagexport
tree
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commitdiff
2023-11-15
James Procter
JAL-4090 blocker patch JAL-3772 tidy up groovy console...
tree
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commitdiff
2023-11-15
James Procter
JAL-4090 JAL-4334 position status when start, end or...
bug/JAL-4334_unknownstartenduniprotfeatures
tree
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commitdiff
2023-11-15
Ben Soares
JAL-3836 Allow .ext.gz files to be recognised in the...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
Ben Soares
JAL-4059 fixed a test that is now working as expected...
tree
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commitdiff
2023-11-13
Ben Soares
JAL-4059 Fix the tooltip formatting for when, e.g....
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
tree
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commitdiff
2023-11-13
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
JAL-4236 don’t look for headers in JalviewJS
tree
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commitdiff
2023-11-13
James Procter
JAL-4336 set preferred dimensions for JTextBox workarou...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 fix JAL-4236 - just put the name of the class...
tree
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commitdiff
2023-11-13
James Procter
JAL-4331 construct and pass on overview title before...
tree
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commitdiff
2023-11-10
Ben Soares
JAL-4240 Remove unnecessary whitespace, being rendered...
tree
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commitdiff
2023-11-10
Ben Soares
JAL-4059 Tidy getting the namespace, and save the names...
tree
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commitdiff
2023-11-09
Ben Soares
JAL-4059 Fix up Jsmol calls and delete html files from...
tree
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commitdiff
2023-11-07
Ben Soares
JAL-4059 fix that boolean for non-value query string...
tree
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commitdiff
2023-11-07
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-03
Ben Soares
JAL-4239 Using own id generation to avoid Random.nextLo...
tree
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-11-02
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-02
Ben Soares
JAL-4059 New namespaced query string parameters.
tree
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commitdiff
2023-11-02
James Procter
JAL-4169 fix up urls to faq and documentation
tree
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commitdiff
2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3921_jmol_session...
tree
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commitdiff
2023-11-02
James Procter
JAL-4217 wrap progress bar creation in an invokeLater...
tree
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commitdiff
2023-11-02
James Procter
JAL-1551 formatting
tree
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commitdiff
2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3088_finalbraceno...
tree
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commitdiff
2023-11-02
James Procter
JAL-4289 JAL-4253 lower end of group boundary vertical...
tree
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commitdiff
2023-11-01
James Procter
Merge branch 'patch/JAL-4281_idwidthandannotHeight_in_p...
tree
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commitdiff
2023-11-01
James Procter
Merge branch 'feature/JAL-4315_fc_draganddrop' into...
tree
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commitdiff
2023-11-01
James Procter
Merge branch 'patch/JAL-4317_enablefeaturewhenadjusting...
tree
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commitdiff
2023-11-01
James Procter
Merge branch 'develop' into patch/JAL-4281_idwidthandan...
tree
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commitdiff
2023-11-01
James Procter
Merge branch 'patch/JAL-4260_fix_up_select_via_ruler_in...
tree
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commitdiff
2023-11-01
James Procter
JAL-4260 encapsulate logic for resolving nearest column...
patch/JAL-4260_fix_up_select_via_ruler_in_wrapped
tree
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commitdiff
2023-11-01
James Procter
JAL-4260 reinstate annotation auto-id-width for wrapped...
tree
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commitdiff
2023-11-01
Ben Soares
JAL-4059 Add the newest exampleFile_2_7.jar to the...
tree
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commitdiff
2023-10-31
James Procter
JAL-4260 fix up click/drags on ruler area in wrapped...
tree
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commitdiff
2023-10-31
Ben Soares
JAL-4059 simpler reimplementation of StringUtils.separa...
tree
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commitdiff
2023-10-31
James Procter
JAL-4260 right align the annotation labels regardless...
tree
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commitdiff
2023-10-31
James Procter
JAL-244 noticed NPE exception was possible when visibil...
tree
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commitdiff
2023-10-31
James Procter
JAL-244 knock on - make sure alignPanel is laid out...
tree
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commitdiff
2023-10-31
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-10-31
Ben Soares
JAL-4059 Converting Pattern/Matcher methods that are...
tree
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commitdiff
2023-10-30
James Procter
JAL-4317 enable display of feature when showing its...
patch/JAL-4317_enablefeaturewhenadjustingstyle
tree
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commitdiff
2023-10-30
James Procter
Handle feature settings files loaded via drag and drop...
feature/JAL-4315_fc_draganddrop
tree
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commitdiff
2023-10-30
James Procter
JAL-4315 allow feature settings to be loaded from a...
tree
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commitdiff
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