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2.6.1 update
[jalview.git]
/
src
/
2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
tree
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commitdiff
2010-11-14
jprocter
refactored protocol check to jalview.io.FileParse
tree
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commitdiff
2010-11-14
jprocter
import annotation file from datasource
tree
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commitdiff
2010-11-14
jprocter
refactored protocol parser and allow human readable...
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commitdiff
2010-11-14
jprocter
zero length operations are valid
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commitdiff
2010-11-14
jprocter
flag indicating if results should be associated immediately
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commitdiff
2010-11-14
jprocter
node rename for deuniquifying trees from web service...
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commitdiff
2010-11-12
jprocter
patch for JAL-682 - copy over current display settings...
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commitdiff
2010-11-12
jprocter
patch for JAL-699 so conservation/consensus threads...
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commitdiff
2010-11-12
jprocter
patch for JAL-700
tree
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commitdiff
2010-11-12
jprocter
revised logic to avoid NPE
tree
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commitdiff
2010-11-11
jprocter
improved logic for distinguishing amino acids and nucle...
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commitdiff
2010-11-11
jprocter
potential non-threadsafe condition
tree
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commitdiff
2010-11-11
jprocter
patch for JAL-655
tree
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commitdiff
2010-11-04
jprocter
prevented URLs appearing in both the 'bad ' and the...
tree
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commitdiff
2010-11-04
jprocter
made ws warning dialog optional, and fixed its wording...
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commitdiff
2010-11-04
jprocter
report any problematic web service URLs ( JAL-343 )
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commitdiff
2010-11-04
jprocter
remove name of progress bar when stopping ws refresh...
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commitdiff
2010-10-29
jprocter
refactored so public interfaces take instances of WsPar...
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commitdiff
2010-10-29
jprocter
parallelised service endpoint discovery and ensured...
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commitdiff
2010-10-20
jprocter
more explicit menu entry text (JAL-675)
tree
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commitdiff
2010-10-20
jprocter
resolve some layout problems : JAL-685
tree
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commitdiff
2010-10-12
jprocter
patch primary issue causing JAL-664 re testing for...
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commitdiff
2010-10-12
jprocter
patch for secondary issue in JAL-664 re parsing empty...
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commitdiff
2010-09-23
jprocter
remove overrides
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commitdiff
2010-09-23
jprocter
NPE race condition alert - see JAL-661
tree
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commitdiff
2010-09-23
jprocter
revised author list
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-09-22
jprocter
Fix and documentation for JAL-657
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commitdiff
2010-09-22
jprocter
jmol update
tree
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commitdiff
2010-09-22
jprocter
jabaws, not jws2
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commitdiff
2010-09-22
jprocter
trap out of memory errors specifically associated with...
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commitdiff
2010-09-22
jprocter
ensure presets and parameters are discovered when servi...
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commitdiff
2010-09-20
jprocter
layout the menu with a minimum number of host labels
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commitdiff
2010-09-20
jprocter
more attempts to fix NPE from race condition
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commitdiff
2010-09-20
jprocter
only indicate that job is broken if it wasn't submitted...
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commitdiff
2010-09-20
jprocter
stop race condition when submenu being populated before...
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commitdiff
2010-09-20
jprocter
ensure host is shown for all non-host indexed submenus
tree
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commitdiff
2010-09-19
jprocter
resolve pdb id/chain to pdb file/model number and chain
tree
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commitdiff
2010-09-19
jprocter
name change for jaba
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commitdiff
2010-09-19
jprocter
cache the runner config so the preset list can be retri...
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commitdiff
2010-09-19
jprocter
progress bar and OOM/Exception traps for project marsha...
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commitdiff
2010-09-19
jprocter
catch case when a service has no parameters (or the...
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commitdiff
2010-09-19
jprocter
make sure only one sequence datasource initialization...
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commitdiff
2010-09-19
jprocter
hack to ensure that if window geometry was not stored...
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commitdiff
2010-09-19
jprocter
thread off sequence fetcher initialisation to make...
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commitdiff
2010-09-17
jprocter
show a save dialog box!
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commitdiff
2010-09-17
jprocter
poss fix for JAL-656
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commitdiff
2010-09-17
jprocter
make sure web service menu is always refreshed on 'OK'
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commitdiff
2010-09-16
jprocter
reflect the state of a failed Job in the GUI (e.g....
tree
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commitdiff
2010-09-16
jprocter
patch to prevent NPE - which occurs if no features...
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commitdiff
2010-09-15
jprocter
added colour by label to feature type colourspec and...
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commitdiff
2010-09-15
jprocter
reinstated the splitpanes with better size placement...
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commitdiff
2010-09-14
jprocter
streamlined app and applet jmol console + event handlin...
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commitdiff
2010-09-13
jprocter
refactored to remove App reference in Applet (JAL-638)
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commitdiff
2010-09-13
jprocter
refactored to remove App reference in Applet (JAL-638)
tree
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commitdiff
2010-09-13
jprocter
patched Jmol and code for embedding JmolAppConsole...
tree
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commitdiff
2010-09-10
jprocter
jabaws, not jaba
tree
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commitdiff
2010-09-10
jprocter
threaded off ws menu building to avoid initial pause...
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commitdiff
2010-09-10
jprocter
properly report invalid jobs (server doesn't support...
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commitdiff
2010-09-10
jprocter
early bail out for long urls, and threaded off group...
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commitdiff
2010-09-09
jprocter
wrap preset description tooltips
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commitdiff
2010-09-09
jprocter
remove duplicate host URLs in service list when not...
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commitdiff
2010-09-09
jprocter
wrap tooltips and revise layout (JAL-644)
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commitdiff
2010-09-09
jprocter
wrap tooltips
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commitdiff
2010-09-09
jprocter
tabbed panes for parameters and options.
tree
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commitdiff
2010-09-08
jprocter
JAL-634 and JAL-635
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commitdiff
2010-09-08
jprocter
JAL-634
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commitdiff
2010-09-08
jprocter
todos & added simple method for other classes to monito...
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commitdiff
2010-09-08
jprocter
trap NPE possiblity for trees that have no associated...
tree
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commitdiff
2010-09-07
jprocter
right click opens view URL popup for both parameters...
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commitdiff
2010-09-07
jprocter
fix for JAL-631
tree
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commitdiff
2010-09-07
jprocter
debug warning / option dialog box display
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commitdiff
2010-09-07
jprocter
kick off the first time service parameter set discovery...
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commitdiff
2010-09-06
jprocter
JAL-591
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commitdiff
2010-09-06
jprocter
new XML representation for web services parameters
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commitdiff
2010-09-06
jprocter
pass user preset arguments to job
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
tree
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commitdiff
2010-09-03
jprocter
distinguish between userdefined parameter set job and...
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commitdiff
2010-09-03
jprocter
parameter set serialization/deserialization and preset...
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commitdiff
2010-09-02
jprocter
fix occasional arrayIndexOutOfBounds when sequences...
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commitdiff
2010-09-02
jprocter
debugged option changed logic and layout
tree
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commitdiff
2010-09-02
jprocter
update gui in gui thread - not structure loading thread
tree
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commitdiff
2010-09-02
jprocter
increment if strings *dont* match
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commitdiff
2010-09-02
jprocter
1.1 compatibility
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commitdiff
2010-09-02
jprocter
re-implemented user prefs logic - still need to debug...
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commitdiff
2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
tree
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commitdiff
2010-08-31
jprocter
notes re JAL-629
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commitdiff
2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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commitdiff
2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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commitdiff
2010-08-31
jprocter
added URL display for parameters/options and debugged...
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commitdiff
2010-08-31
jprocter
utilities for cloning and manipulating JabaWS parameter...
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commitdiff
2010-08-27
jprocter
refactored seq/str binding methods and ensured that...
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commitdiff
2010-08-27
jprocter
patch for structures with multiple models, and refactor...
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commitdiff
2010-08-27
jprocter
1.2 compatibility
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commitdiff
2010-08-27
jprocter
revised sequence/structure binding so one structure...
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commitdiff
2010-08-27
jprocter
revised sequence/structure binding so one structure...
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commitdiff
2010-08-27
jprocter
patch re issues.jalview.org/browse/JAL-583 : hack to...
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commitdiff
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