use .jalview.uniprot.xml
[jalview.git] / src /
2005-06-15 amwaterhouseuse .jalview.uniprot.xml
2005-06-15 amwaterhouseCheck colours not null
2005-06-15 amwaterhousecheck colourscheme is not null
2005-06-15 amwaterhousepaintrefresher
2005-06-15 amwaterhouseadd/remove updated
2005-06-15 amwaterhouseColumn selection changed
2005-06-15 amwaterhouseREmove commented out lines
2005-06-15 amwaterhouseallow for fastpaint
2005-06-15 amwaterhouseadd / remove editable columns
2005-06-15 amwaterhouseTooltip changed
2005-06-14 amwaterhousechange name of uniprot file
2005-06-14 amwaterhouseadd version
2005-06-14 amwaterhouseremove system.out
2005-06-14 jprocterpad-1 gaps fixed.
2005-06-14 jprocterslight modification to srs query so it takes both unipr...
2005-06-14 jprocterArbitrary decision to keep friendly id name when readin...
2005-06-14 amwaterhouseupdate conservation colours after edit
2005-06-14 amwaterhouseToolTip updated
2005-06-14 amwaterhouseadd value to conservation mouseover
2005-06-14 amwaterhouseif seq is null, dont check pdb
2005-06-14 amwaterhousemouse pressed moved to mouseclicked
2005-06-14 amwaterhouseDeselect sets annotationPanel activeres null
2005-06-14 amwaterhousereset if clustalX colouring
2005-06-14 amwaterhouseDont delete nextSeq
2005-06-14 amwaterhousePaintRefresher must be sent alignment
2005-06-14 amwaterhousesuper.paintComponent
2005-06-14 amwaterhouseSet background colour of applet RGB
2005-06-14 amwaterhouseprotected now public
2005-06-14 amwaterhouseDouble click to launch file browser
2005-06-14 amwaterhousetooltips instant (hopefully)
2005-06-14 amwaterhouseNo spaces allowed in sequence name
2005-06-14 amwaterhouseLoad/Save trees
2005-06-14 amwaterhouseReturns TreePanel when opening Newick
2005-06-14 amwaterhouseSaves trees
2005-06-13 jprocternull pointer fix.
2005-06-13 amwaterhouseuses paintrefresher
2005-06-13 amwaterhouseclustal probs
2005-06-13 amwaterhousequit saves screen size
2005-06-13 amwaterhouseUpdates checkboxes on load
2005-06-13 amwaterhousePaintRefresh changed
2005-06-13 amwaterhouseprotected now public
2005-06-13 amwaterhouseQuit actionPerformed
2005-06-13 amwaterhouseGet colourScheme with seqs and width
2005-06-10 amwaterhouseSeqFetcher modified
2005-06-10 amwaterhouseremove imports
2005-06-10 amwaterhouseFastpaint is false initially
2005-06-10 jprocteradded logs.Castor.level
2005-06-10 jprocteradded castor logger configuration.
2005-06-10 amwaterhouseRemove imports
2005-06-10 amwaterhouseset conservation/consensus in constructor
2005-06-10 jprocterremoved exception name from server error state (to...
2005-06-09 amwaterhouseneeded for applet search
2005-06-09 amwaterhouseMonospaced
2005-06-09 amwaterhouseWarn if Textarea limit has been reached
2005-06-08 amwaterhousereplace space
2005-06-08 amwaterhousegroup recalc conserve
2005-06-08 amwaterhouserecalc group conserve
2005-06-08 amwaterhouseif missing forward slash
2005-06-08 amwaterhouseRecalc accelerated
2005-06-08 amwaterhouseSets sequence features
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-08 amwaterhouse*** empty log message ***
2005-06-08 amwaterhouseAdd email to about
2005-06-07 jprocteradded a couple of debug statements for unix browser...
2005-06-06 amwaterhousecloses if accepted
2005-06-05 jproctermade error for browser configuration on unix a bit...
2005-06-05 jprocterfirefox now default for unixen.
2005-06-05 jproctermore subtle rearrangements
2005-06-03 jprocterReinstated 'create tree from selected region only'...
2005-06-02 jproctertidied the exceptions and ws server error behaviour
2005-06-02 amwaterhouseWarn if URL not found
2005-06-02 amwaterhouseCut and paste changed
2005-06-02 amwaterhouseReverse order for windows, readin from url
2005-06-02 amwaterhousestartup file is jalview.org
2005-06-02 amwaterhouseName of xml file changed
2005-06-02 amwaterhouseCheck startup file is not null
2005-06-02 jprocterminor changes to make jalopy happy
2005-06-02 jprocterminor changes to try and make jalopy happy
2005-05-31 jprocterMoved comment so it doesn't break jalopy (this is not...
2005-05-30 jprocterChanged sortByPID to use the gapped PID function.
2005-05-30 jproctercomments
2005-05-30 jprocterAdded clustalW 'realignment' (primitive)
2005-05-30 jprocteradded default ClustalWS or MuscleWS to remove gaps.
2005-05-30 jprocterpropagated use of jalview.util.GapChars for gap removal.
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids
2005-05-30 jproctermodified history for redundancy removal.
2005-05-30 jprocterfixed stacktrace potential for pairwise alignment action.
2005-05-30 jprocterModified output on stdout for similarity matrix.
2005-05-27 jprocterfixed brain interruption bug.
2005-05-27 amwaterhouseignores blank lines read in and write out
2005-05-27 jprocterright ordering for RedundancyPanel constructor
2005-05-27 jprocteradded proper state check for failedJob flag.
2005-05-27 jprocterAdded jobFail state
2005-05-27 jprocterbetter recognition of MSF files.
2005-05-27 amwaterhouseidentity changed
2005-05-27 amwaterhouseCut and paste menus added
2005-05-27 amwaterhouseCut and paste changes
2005-05-27 amwaterhouseC&P changes
2005-05-27 amwaterhouseCheck if colos are null
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