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adds AlignFrame name jalview-alignment;
[jalview.git] / src /
2019-01-14 Ben SoaresJAL-3141 Made more constants tree | commitdiff
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu tree | commitdiff
2019-01-14 gmungocJAL-2069 wider dialog so all fields show! tree | commitdiff
2019-01-14 gmungocJAL-3186 reorder popup menu slightly tree | commitdiff
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... tree | commitdiff
2019-01-14 gmungocJAL-3125 tidy up tree | commitdiff
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value tree | commitdiff
2019-01-11 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... tree | commitdiff
2019-01-11 hansonr(commented out but potentially useful) methods to tap... tree | commitdiff
2019-01-11 hansonrJS optimization for too aggressive dynamic operation... tree | commitdiff
2019-01-11 hansonradding (unnecessary, but informative super() call in... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests tree | commitdiff
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... tree | commitdiff
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO tree | commitdiff
2019-01-09 gmungocJAL-3032 stub JS tabbed pane removed as not used tree | commitdiff
2019-01-09 gmungocJAL-3032 tweak inner/outer class references tree | commitdiff
2019-01-09 gmungocJAL-3032 refine 'empty status message' test (JS issue... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the... tree | commitdiff
2019-01-09 hansonrsimplification of FeatureSettings inner classes tree | commitdiff
2019-01-09 hansonrcomment added in relation to status bar tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review tree | commitdiff
2019-01-08 gmungocJAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu tree | commitdiff
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... tree | commitdiff
2019-01-04 gmungocJAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering tree | commitdiff
2019-01-04 gmungocJAL-3181 simplified code and test tree | commitdiff
2019-01-03 gmungocJAL-3181 order link menu items tree | commitdiff
2018-12-25 hansonrbetter Jmol help link tree | commitdiff
2018-12-21 gmungocJAL-1767 minimise local variable scope tree | commitdiff
2018-12-21 gmungocJAL-3032 prefer Jalview.isJS() to j2sNative tree | commitdiff
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 tree | commitdiff
2018-12-20 hansonrJalviewFileChooser back to original; synth. ref fixed... tree | commitdiff
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 tree | commitdiff
2018-12-20 hansonrpreliminary hack fix for synthetic reference issue tree | commitdiff
2018-12-20 hansonrseq panel issue with shift-left-mouse drag fix tree | commitdiff
2018-12-20 hansonrlabel work; adds preliminary _j2sclasslist.txt tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 tree | commitdiff
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature tree | commitdiff
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method tree | commitdiff
2018-12-18 gmungocJAL-3048 fix NPE in file chooser callbacks map tree | commitdiff
2018-12-18 gmungocMerge branch 'JAL-3048dialogRunner2' into Jalview-BH... tree | commitdiff
2018-12-18 gmungocJAL-3032 revert table repaint customisations tree | commitdiff
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation tree | commitdiff
2018-12-18 hansonrremoving special needs for JavaScript table repainting tree | commitdiff
2018-12-18 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into tree | commitdiff
2018-12-18 hansonrtable work tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... tree | commitdiff
2018-12-17 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop tree | commitdiff
2018-12-17 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into... tree | commitdiff
2018-12-17 gmungocJAL-3068 tidy status bar messaging tree | commitdiff
2018-12-17 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view tree | commitdiff
2018-12-13 hansonrSwingJS 3.2.4.05 should fix JFileChooser synthetic... tree | commitdiff
2018-12-11 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... tree | commitdiff
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse tree | commitdiff
2018-12-10 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into tree | commitdiff
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite tree | commitdiff
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite... tree | commitdiff
2018-12-10 gmungocJAL-3048 DialogRunner changes (wip) tree | commitdiff
2018-12-10 gmungocJAL-1544 corrected 'adjunst' to 'adjust' tree | commitdiff
2018-12-10 hansonrFaster JTable processing; fixes Annotation painting... tree | commitdiff
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle... tree | commitdiff
2018-12-06 gmungocJAL-3048 explicit instead of default 'No' response... tree | commitdiff
2018-12-06 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... tree | commitdiff
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations tree | commitdiff
2018-12-04 gmungocJAL-3032 set radio buttons transparent tree | commitdiff
2018-12-04 hansonrx,y switch in FeatureIcon tree | commitdiff
2018-12-03 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-12-03 gmungocJAL-3168 include feature type in colour chooser dialog... tree | commitdiff
2018-12-03 gmungocJAL-3167 end cell editing on cancel in colour chooser tree | commitdiff
2018-12-03 gmungocJAL-3058 provide cancel callback method for colour... tree | commitdiff
2018-12-01 hansonradding jaxbtest.jvx and directing JalviewJS2.java to... tree | commitdiff
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu tree | commitdiff
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-11-27 gmungocJAL-3163 only log missing message keys once each tree | commitdiff
2018-11-26 gmungocJAL-3162 only allow start <= end while modifying bug/JAL-3162featureStartLtEnd tree | commitdiff
2018-11-26 gmungocJAL-3032 make JS properties conditional on Jalview... tree | commitdiff
2018-11-26 hansonradds swingjs.overflow.hidden client property tree | commitdiff
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange tree | commitdiff
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 javadoc, don’t darken white when shading resid... tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation tree | commitdiff
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