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JAL-3285 method call name change to SeqPanel not included in merge
[jalview.git]
/
src
/
2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 new method AlignmentI.getVisibleWidth()
tree
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commitdiff
2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
tree
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commitdiff
2018-09-10
gmungoc
JAL-3108 fix concurrency bug in Reveal action handler
tree
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commitdiff
2018-09-09
Jim Procter
JAL-3106 normalise extension before checking if it...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 if selected file is null (On Java 10/OSX ...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 workaround: overload getSelectedFile() because...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3106 use .jvp as default
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3105 reallocate quality and consensus annotation...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3076ensemblGeneId' into develop
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov...
tree
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commitdiff
2018-09-05
Jim Procter
JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7...
bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'patch/VAqua_saveload_update_JAL-2988...
tree
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commitdiff
2018-09-03
gmungoc
Merge branch 'trialMerge' into releases/Release_2_10_5_...
tree
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commitdiff
2018-09-03
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception' into...
tree
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commitdiff
2018-09-03
Jim Procter
JAL-3076 clarify javadoc handling single sequence respo...
bug/JAL-3076ensemblGeneId
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-30
Jim Procter
JAL-3092 make sure base pair counter is always moved...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
tree
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commitdiff
2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
tree
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commitdiff
2018-08-27
Ben Soares
JAL-3061 / JAL-3053
tree
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commitdiff
2018-08-22
Jim Procter
JAL-2988 workaround for jalview save as dialogs - clear...
tree
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commitdiff
2018-08-16
gmungoc
JAL-3082 handle regex error, exclusive threshold, unit...
tree
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commitdiff
2018-08-15
gmungoc
JAL-3080 remove tree partition if no groups created
feature/JAL-3080clearTreeGroups
tree
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commitdiff
2018-08-14
gmungoc
JAL-3078 reset Tree font (only!) on Cancel
bug/JAL-3078cancelTreeFont
tree
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commitdiff
2018-08-10
gmungoc
JAL-3018 updated to Ensembl REST 7.0
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 refactor for more efficient scan of 'gene...
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
|
commitdiff
2018-08-03
Ben Soares
JAL-3061
tree
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commitdiff
2018-08-02
Ben Soares
JAL-3053
tree
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commitdiff
2018-07-30
bsoares
Fixed bug ignoring "alpha" extended braces in RNA SS...
tree
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commitdiff
2018-07-25
gmungoc
JAL-3073 select columns if dragging sideways in a graph...
bug/JAL-3072scrollThread
tree
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commitdiff
2018-07-25
gmungoc
JAL-3074 don't scroll up/down on drag out of scale...
tree
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commitdiff
2018-07-25
gmungoc
JAL-3072 SeqPanel.stopScrolling on mouse up in scale...
tree
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commitdiff
2018-07-18
Jim Procter
Merge branch 'features/mchmmer' into features/mchmmer_m...
features/mchmmer_merge_JAL-1950
tree
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commitdiff
2018-07-17
bsoares
JAL-3065
tree
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commitdiff
2018-07-03
gmungoc
JAL-3054 table tooltip follow mouse in a sensible manner
bug/JAL-3049colourCellTooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 removed wrong way to set tooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 working tooltip on colours column
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3042 don't allow user to change default history...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
Jim Procter
Merge branch 'bugs/JAL-3009_blockingNetworkThreads...
tree
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commitdiff
2018-06-07
gmungoc
JAL-2755 correct Javadoc and error handling
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
gmungoc
JAL-3013 resolve symlink to hmmer binaries folder
features/mchmmer
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-06
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-06-06
gmungoc
JAL-3013 ensure Chimera as a symlink gets resolved
tree
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commitdiff
2018-06-06
gmungoc
JAL-2956 don't load (non-existent) HMMER jar entry...
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
tree
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commitdiff
2018-06-05
gmungoc
JAL-3011 include annotation scores in sequence id toolt...
tree
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commitdiff
2018-06-05
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-06-04
gmungoc
JAL-3018 updated REST versions to 6.3
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-01
Jim Procter
JAL-3012 JAL-2937 TODO avoid creating data copies by...
tree
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commitdiff
2018-06-01
Jim Procter
JAL-2937 hmmbuild input data generated via AlignmentVie...
tree
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commitdiff
2018-06-01
Jim Procter
JAL-1950 JAL-2937 allow individual groups to be remater...
tree
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commitdiff
2018-06-01
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2018-06-01
Jim Procter
JAL-1950 JAL-2937 allow copy of group without sequences...
tree
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commitdiff
2018-06-01
Jim Procter
JAL-1950 JAL-2937 allow copy of sequences from group...
tree
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commitdiff
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