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jnetfile can be loaded onto alignment
[jalview.git]
/
src
/
2006-08-29
amwaterhouse
jnetfile can be loaded onto alignment
tree
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commitdiff
2006-08-29
amwaterhouse
SequenceMapping updated
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commitdiff
2006-08-29
amwaterhouse
Jnet files sent to servlet as annotations
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commitdiff
2006-08-22
amwaterhouse
To uppercase only visible
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commitdiff
2006-08-22
jprocter
getSequenceStrings() bug fixed.
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commitdiff
2006-08-22
amwaterhouse
Remove group when hiding cols from scalePanel
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commitdiff
2006-08-22
amwaterhouse
2006
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commitdiff
2006-08-22
amwaterhouse
Put transparency back
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commitdiff
2006-08-22
amwaterhouse
make 1.1 compatible
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commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
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commitdiff
2006-08-22
jprocter
off by one bug in hiden column unmarshalling
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
Add uniprot DBref
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commitdiff
2006-08-21
amwaterhouse
Remove system.out
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commitdiff
2006-08-21
amwaterhouse
1.1 compatible
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commitdiff
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
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commitdiff
2006-08-21
jprocter
fixed undo-redo bug, hidden columns are moved with...
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commitdiff
2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
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commitdiff
2006-08-21
jprocter
fix for truncation of sequence associated annotation...
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commitdiff
2006-08-21
jprocter
added shiftList to record changes in alignment column...
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commitdiff
2006-08-21
jprocter
remove gaps method from AlignFrame.remove_gaps_actionPe...
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commitdiff
2006-08-21
jprocter
inverse ShiftList and SequenceI.gapMap->ShiftList methods.
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commitdiff
2006-08-21
jprocter
avoid null pointer exceptions
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commitdiff
2006-08-20
jprocter
javadoc
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commitdiff
2006-08-18
amwaterhouse
Check colourScheme is not null - jalview prior 2.5...
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commitdiff
2006-08-18
amwaterhouse
dont remove all representative seqs on delete groups
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commitdiff
2006-08-18
amwaterhouse
remove all representative seqs on delete groups
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commitdiff
2006-08-18
amwaterhouse
treeFile = treeFile
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commitdiff
2006-08-18
amwaterhouse
Only discover DAS sources if panel shown
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commitdiff
2006-08-18
amwaterhouse
only set new layout if 2 buttons visible
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commitdiff
2006-08-18
amwaterhouse
Jalview features format adds links as hrefs
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commitdiff
2006-08-17
amwaterhouse
H key updates
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commitdiff
2006-08-17
amwaterhouse
OptionPane invokeLater
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commitdiff
2006-08-17
amwaterhouse
If no annotation exists
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commitdiff
2006-08-17
amwaterhouse
Set bg white
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commitdiff
2006-08-17
amwaterhouse
Hold onto selected region when hiding all columns only
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commitdiff
2006-08-17
jprocter
moved visible sub-alignment extraction and update from...
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commitdiff
2006-08-17
jprocter
javadoc
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commitdiff
2006-08-17
amwaterhouse
Monospace check
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commitdiff
2006-08-17
amwaterhouse
1 more pixel allowed between chars and graph
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commitdiff
2006-08-17
amwaterhouse
control and shift
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commitdiff
2006-08-17
amwaterhouse
Dont set group null hideCOls
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commitdiff
2006-08-17
amwaterhouse
OptionPanes invokeLater
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commitdiff
2006-08-17
amwaterhouse
Control and alt for toggle hide
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commitdiff
2006-08-16
amwaterhouse
Fire alignment changed if seqs hidden / revealed
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commitdiff
2006-08-15
amwaterhouse
Correct title for sequence parameter applets
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commitdiff
2006-08-15
amwaterhouse
Sequences can be added as parameter
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commitdiff
2006-08-15
jprocter
make annotation label font size follow alignment font...
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commitdiff
2006-08-15
jprocter
first stage of adapting JNet client to hidden regions...
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commitdiff
2006-08-15
jprocter
fixed alignment ordering name.
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commitdiff
2006-08-15
jprocter
ensure that close widget is available for jobs that...
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commitdiff
2006-08-15
amwaterhouse
Acknowledgement
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commitdiff
2006-08-15
amwaterhouse
Setselectiongroup null on hide
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commitdiff
2006-08-15
amwaterhouse
H key to hide / reveal
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commitdiff
2006-08-15
amwaterhouse
Add key listener to scalePanel and annotationPanel
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commitdiff
2006-08-15
amwaterhouse
Select revealed seqs
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commitdiff
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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commitdiff
2006-08-15
amwaterhouse
Move features to dataset
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser added
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser
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commitdiff
2006-08-14
jprocter
refactored to create generic polling thread and subjobs
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commitdiff
2006-08-14
jprocter
function to indicate job has finished but no results...
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commitdiff
2006-08-14
amwaterhouse
new feature added
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commitdiff
2006-08-14
amwaterhouse
Stop loading must be before JOptionPane, 1.5 bug
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commitdiff
2006-08-14
amwaterhouse
No need to check selection group size
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commitdiff
2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
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commitdiff
2006-08-14
amwaterhouse
Do a loop for multiple seq matches
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commitdiff
2006-08-14
amwaterhouse
Correct test string
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commitdiff
2006-08-14
jprocter
multiple subjobs can be cancelled and gui only allows...
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commitdiff
2006-08-14
jprocter
fixed off by one bug in end sequence from getSubSequenc...
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commitdiff
2006-08-14
amwaterhouse
findingFeatures flag set
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commitdiff
2006-08-14
jprocter
end<start for empty sequences in Sequence[] from SeqCigar[]
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commitdiff
2006-08-14
amwaterhouse
elementAt instead of get for 1.1 compatibility
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commitdiff
2006-08-14
jprocter
fixing residue clip bug in MsaWSThread and adding minim...
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commitdiff
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
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commitdiff
2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
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commitdiff
2006-08-11
amwaterhouse
Update overview on conservation/pid slider mouseRelease
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commitdiff
2006-08-11
amwaterhouse
alignpanel.repaint
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commitdiff
2006-08-11
amwaterhouse
Add links menu if no sequence is selected
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commitdiff
2006-08-11
amwaterhouse
popup must be added to panel before showing
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commitdiff
2006-08-11
amwaterhouse
param tree replaces treeFile
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commitdiff
2006-08-11
amwaterhouse
Desktop is null if -noDisplay is set
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commitdiff
2006-08-11
amwaterhouse
Make a new FeatureRenderer
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commitdiff
2006-08-11
amwaterhouse
AlignPanel.repaint
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commitdiff
2006-08-11
amwaterhouse
Printstacktrace
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commitdiff
2006-08-11
amwaterhouse
inFile might be null if PDB was pasted
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commitdiff
2006-08-10
amwaterhouse
Smoother drawing
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commitdiff
2006-08-10
amwaterhouse
Check selection size before making tree
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commitdiff
2006-08-10
amwaterhouse
group.getSize should be ab.alignment.getGroups
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commitdiff
2006-08-10
amwaterhouse
Check alAndColSel are not null
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commitdiff
2006-08-10
amwaterhouse
Control and shift for col selection
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commitdiff
2006-08-10
amwaterhouse
Reset button added
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commitdiff
2006-08-10
amwaterhouse
Right mouse works with cursor mode
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commitdiff
2006-08-10
amwaterhouse
Only add 1 feature settings table
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commitdiff
2006-08-10
amwaterhouse
Comment out start and end refs
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commitdiff
2006-08-10
amwaterhouse
1.1 compatible
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commitdiff
2006-08-10
amwaterhouse
file: is a URL
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commitdiff
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