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JAL-1551 remove temp file in src
[jalview.git] / src /
2023-02-03 James ProcterJAL-1551 remove temp file in src tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-26 Ben SoaresJAL-4118 fix a small buglet in BackupFiles exhibited... tree | commitdiff
2023-01-25 James ProcterJAL-4116 relegate the failed to promote warning to... tree | commitdiff
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... tree | commitdiff
2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop tree | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 formatting tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 More explicit setting of FlatLaf macOS theme tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme... tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 remove a missed panel titlebar icon in TreePanel tree | commitdiff
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf tree | commitdiff
2022-11-16 Ben SoaresJAL-4019 finalised a boolean option and tidied some... tree | commitdiff
2022-11-14 Ben SoaresJAL-4019 Make diagnostic message debug level tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 small but important corrections to array order... tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 improvement to short sequence nucleotide detec... tree | commitdiff
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling tree | commitdiff
2022-11-08 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3776 Formatting JvOptionPane tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Fixes highlighted by tests tree | commitdiff
2022-11-04 Ben SoaresJAL-3416 Added logoIcon to quit (and potentially other... tree | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie... tree | commitdiff
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent... tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace... tree | commitdiff
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... tree | commitdiff
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE tree | commitdiff
2022-11-01 Ben SoaresJAL-1988 JAL-3772 Change default alignmentviewport... tree | commitdiff
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz... tree | commitdiff
2022-10-30 Jim ProcterJAL-4091 lines to associate rows sharing same sequence... tree | commitdiff
2022-10-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-10-29 Ben SoaresJAL-1988 JAL-3772 removed a debugging log line tree | commitdiff
2022-10-29 Jim ProcterJAL-4094 shift+click drag up/down to resize all annotat... tree | commitdiff
2022-10-29 Jim ProcterJAL-4091 - noodling about including the names for seque... tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... tree | commitdiff
2022-10-28 Jim ProcterJAL-2349 allow contact matrix to provide labels for... tree | commitdiff
2022-10-28 Jim ProcterJAL-4086 commented out attempt to create measurement... tree | commitdiff
2022-10-28 Jim ProcterJAL-4089 use column selection to superpose if 4 or... tree | commitdiff
2022-10-28 Jim ProcterJAL-2961 centerViewOn command for structure viewers... tree | commitdiff
2022-10-28 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Fixed wait between waitDialog appeara... tree | commitdiff
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane... tree | commitdiff
2022-10-27 Ben SoaresMerge branch 'develop' into bug/JAL-1988_JAL-3772_impro... tree | commitdiff
2022-10-27 Ben SoaresJAL-4083 don't need globalUseScriptWait after all,... bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol tree | commitdiff
2022-10-27 Ben SoaresJAL-4083 only set globalUseScriptWait if needed tree | commitdiff
2022-10-27 Ben SoaresJAL-4083 Use jmolViewer.scriptWait instead of jmolViewe... tree | commitdiff
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti... tree | commitdiff
2022-10-26 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-10-25 Ben SoaresJAL-3772 silly NPE error fixed tree | commitdiff
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 wait timer working first time but... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... tree | commitdiff
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with... tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 fix failing tests tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 experiment masking hidden columns... tree | commitdiff
2022-10-21 Jim ProcterJAL-4033 - heuristic threshold for pAE matrix - mark... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 formatting/pick correct exception tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 off by one and daft return tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 avoid div-by-zero when annotation height is... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 JAL-2349 AlignmentI.getContactList takes care... tree | commitdiff
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 (still buggy) interactive selection - time... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 tooltip reports value from contact range tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 adjusted range calculation to be inclusive... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 debugged click/drag and added yellow rubber... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 - interactive point-wise row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 RGB colours from the alphafold paE scale. tree | commitdiff
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc... tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 column selection highlighting tree | commitdiff
2022-10-17 Jim ProcterJAL-3855 bump AF version to 3 - keep contact renderer... tree | commitdiff
2022-10-17 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-17 Jim ProcterJAL-3855 report download errors as errors! tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF... tree | commitdiff
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