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Fix buttons on the PaSiMap plot window
[jalview.git] / src /
2023-09-18 MorellThomasFix buttons on the PaSiMap plot window tree | commitdiff
2023-09-16 MorellThomasCorrectly working implementation of the PaSiMap pipeline tree | commitdiff
2023-09-16 MorellThomasAlmost working tree | commitdiff
2023-09-08 MorellThomasProperly integrated endGaps option for AlignSeq.traceAl... tree | commitdiff
2023-09-07 MorellThomasMerge branch 'hardcode' tree | commitdiff
2023-09-07 MorellThomasImplemented least-squares optimisation in ccAnalysis tree | commitdiff
2023-08-04 MorellThomasFix alignment and score calculation for cc_analysis tree | commitdiff
2023-07-22 MorellThomasImplement MSA, scoring and counting the connections tree | commitdiff
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae tree | commitdiff
2023-07-20 James ProcterJAL-3855 auto select clusters and fix up colouring... tree | commitdiff
2023-07-18 James ProcterJAL-3855 PAE matrices are transposed on import from... tree | commitdiff
2023-07-18 James ProcterJAL-3858 fix off-by-one in matrix visualisation and... tree | commitdiff
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top... tree | commitdiff
2023-07-18 James ProcterJAL-3858 annotation .height is bigger than graphHeight... tree | commitdiff
2023-07-17 James ProcterJAL-4119 TRACE level console message reporting download... tree | commitdiff
2023-07-12 James ProcterJAL-4223 - test and patch to ensure numbering matches... tree | commitdiff
2023-07-09 MorellThomasCopied PCA files to PaSiMap analogues and changed all... tree | commitdiff
2023-07-08 MorellThomasIncludes the PaSiMap button in the CalculationChooser tree | commitdiff
2023-07-07 James ProcterJAL-4217 JAL-629 built in 25s time out waiting for... tree | commitdiff
2023-07-07 James ProcterMerge branch 'patch/JAL-4119_sifts_ftp_split' into... tree | commitdiff
2023-07-07 James ProcterJAL-4221 update description when transferring annotatio... tree | commitdiff
2023-07-07 James ProcterJAL-629 even more console debug for --structureviewer... tree | commitdiff
2023-07-06 James ProcterJAL-629 liberal defensive coding, comments about refact... tree | commitdiff
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin... tree | commitdiff
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... tree | commitdiff
2023-07-06 James ProcterJAL-4217 interruptedExceptions should also break any... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-05 James ProcterMerge branch 'patch/JAL-2292_caseSensitivePAE' into... tree | commitdiff
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection... tree | commitdiff
2023-07-04 James ProcterJAL-4117 JAL-1551 source licensing tree | commitdiff
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... tree | commitdiff
2023-06-30 James ProcterJAL-4216 compute size of annotation using start/end... tree | commitdiff
2023-06-30 Ben SoaresJAL-4001 Added a random id to User-Agent to ensure... task/JAL-4001_Plausible_API tree | commitdiff
2023-06-29 James ProcterJAL-4001 analytics url provided by https://jalview... tree | commitdiff
2023-06-28 Ben SoaresJAL-4001 change Plausible discovery URL tree | commitdiff
2023-06-28 Ben SoaresJAL-4001 remove headless code from analytics tree | commitdiff
2023-06-28 Ben SoaresJAL-4001 Remove analytics for --headless mode tree | commitdiff
2023-06-27 Ben SoaresJAL-4001 Added useful props information tree | commitdiff
2023-06-22 Ben SoaresMerge branch 'develop' into task/JAL-4001_Plausible_API tree | commitdiff
2023-06-22 Ben SoaresJAL-4001 Fix default API url tree | commitdiff
2023-06-22 James ProcterJAL-4213 don’t pass active selection when actioning... patch/JAL-4213_addref_with_selection tree | commitdiff
2023-06-22 James ProcterJAL-4213 - document the addReferenceAnnotations method... tree | commitdiff
2023-06-22 Ben SoaresJAL-4001 Added 'installation' property. tree | commitdiff
2023-06-22 James ProcterJAL-2292 - ensure mapping is built for equal symbols... patch/JAL-2292_caseSensitivePAE tree | commitdiff
2023-06-22 Ben SoaresJAL-4001 Added lookup to https://jalview.org/config... tree | commitdiff
2023-06-22 Ben SoaresJAL-4019 corrected to '>' to '>=' for percentage compar... bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed tree | commitdiff
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising tree | commitdiff
2023-06-21 Ben SoaresJAL-4001 Rationalise user-agent string into HttpUtils tree | commitdiff
2023-06-21 Ben SoaresJAL-4001 Change wording from google to plausible or... tree | commitdiff
2023-06-20 Ben SoaresJAL-4001 rename the init method tree | commitdiff
2023-06-20 Ben SoaresJAL-4001 Working Plausible analytics tree | commitdiff
2023-06-20 Ben SoaresJAL-4001 Plausible class tree | commitdiff
2023-06-20 Ben SoaresJAL-4001 Added a genuine client_id (from gtag). Added... task/JAL-4001_migrate_googleanalytics_to_GA4 tree | commitdiff
2023-06-17 Ben SoaresJAL-4001 Check --nousagestats before doing analytics... tree | commitdiff
2023-06-16 Ben SoaresJAL-4001 Add a _geo=1 to query string and JSON. Add... tree | commitdiff
2023-06-16 Ben SoaresJAL-4001 Remove jgoogleanalytics code and jar tree | commitdiff
2023-06-16 Ben SoaresJAL-4001 make page_location the same encoding as the... tree | commitdiff
2023-06-15 Ben SoaresJAL-4001 Changed for Java 8 compatibility tree | commitdiff
2023-06-14 Ben SoaresJAL-4001 Trying to see extra information in GA dashboard tree | commitdiff
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails tree | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... tree | commitdiff
2023-06-08 Ben SoaresJAL-4001 Only send defaultParams for application_launch... tree | commitdiff
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-08 James ProcterMerge branch 'develop' into patch/JAL-4196_structure_vi... tree | commitdiff
2023-06-08 James ProcterJAL-4196 make very sure we avoid CME by defensively... tree | commitdiff
2023-06-08 James ProcterJAL-4196 report an error if structure view doesn’t... tree | commitdiff
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... tree | commitdiff
2023-06-08 Ben SoaresJAL-3416 FlatLaf SystemInfo failing in JalviewJS. ... tree | commitdiff
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 Javadoc for the method to use tree | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... tree | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... tree | commitdiff
2023-06-07 James ProcterJAL-4195 catch thrown exceptions (if any) during image... tree | commitdiff
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 Added more params for application_launch tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 removed a test param tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... tree | commitdiff
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them tree | commitdiff
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised... tree | commitdiff
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme... tree | commitdiff
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat... tree | commitdiff
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather... tree | commitdiff
2023-06-06 James ProcterJAL-629 - remove TODO from jalview.bin.Jalview since... tree | commitdiff
2023-06-06 James ProcterJAL-4195 Debug message indicating creation of an image... tree | commitdiff
2023-06-06 James ProcterJAL-1551 a bit of javadoc for Jalview.testoutput methods tree | commitdiff
2023-06-05 Ben SoaresJAL-4001 debugging statements tree | commitdiff
2023-06-05 Ben SoaresJAL-4001 untested GA4 client code tree | commitdiff
2023-06-05 Ben SoaresJAL-4001 most of google analytics client tree | commitdiff
2023-06-05 Ben SoaresJAL-4001 start of GA4 client class tree | commitdiff
2023-06-02 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-01 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... tree | commitdiff
2023-06-01 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-06-01 Ben SoaresJAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt... tree | commitdiff
2023-06-01 Ben SoaresJAL-4001 Changed title+message to MessageManager tree | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... tree | commitdiff
2023-06-01 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-06-01 James ProcterJAL-4134 properly resolve positions in associated align... features/JAL-4134_use_annotation_row_for_colours_and_groups tree | commitdiff
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