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JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS
[jalview.git]
/
src
/
2018-10-29
gmungoc
JAL-3038 add ActionListener and FocusListener to SwingJ...
tree
|
commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-23
Ben Soares
BackupFilter and other unfinished business
tree
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commitdiff
2018-10-23
gmungoc
JAL-3139 check group visibility when removing 'redundan...
bug/JAL-3139colocatedFeatures
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Tidying
tree
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commitdiff
2018-10-19
Ben Soares
JAL-3141 Backup files being created with default suffix...
tree
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commitdiff
2018-10-17
hansonr
nonfunctional testing directory - just so I can see...
tree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 always look up sequence ID colour from view...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 Colour sequences by ID - need to check that...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 comments, javadoc, method signature tweaks
feature/JAL-1244stretchStatusMsg
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 editSequence extract method refactoring
tree
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commitdiff
2018-10-05
gmungoc
JAL-1244 improved status message for insert/delete gap
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 status message for sequence and/or graph group...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 no status message (yet) for locked edit of...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message for insert/delete gaps on singl...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message while dragging a stretch group
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
tree
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commitdiff
2018-10-04
gmungoc
JAL-3093 unit tests, no mouse action over left/right...
tree
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commitdiff
2018-10-03
gmungoc
JAL-3093 tweaks to code and test for 3px gap above...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 unit tests for SeqPanel.findMousePosition
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 limited Consensus popup menu when in wrapped...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 added MousePos.isOverAnnotation() for extra...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 'read-only' annotations when in wrapped mode
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 refactor (+test) Annotation Labels tooltip...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 show annotation tooltips and status message...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 new method to test if feature fails colour...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 method that tests all conditions for feature...
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2018-09-24
gmungoc
JAL-3063 tidy commented out code
tree
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commitdiff
2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
gmungoc
JAL-3113 override minimum frame size in a way that...
tree
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commitdiff
2018-09-11
gmungoc
JAL-3048 recoded edit View Name dialog for JalviewJS
tree
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commitdiff
2018-09-11
gmungoc
JAL-3056 offer New / Expand / Gather View in JalviewJS
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 new method AlignmentI.getVisibleWidth()
tree
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commitdiff
2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
tree
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commitdiff
2018-09-10
gmungoc
JAL-3108 fix concurrency bug in Reveal action handler
tree
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commitdiff
2018-09-09
Jim Procter
JAL-3106 normalise extension before checking if it...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 if selected file is null (On Java 10/OSX ...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-2988 workaround: overload getSelectedFile() because...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3106 use .jvp as default
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3105 reallocate quality and consensus annotation...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3076ensemblGeneId' into develop
tree
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commitdiff
2018-09-05
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov...
tree
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commitdiff
2018-09-05
Jim Procter
JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7...
bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'patch/VAqua_saveload_update_JAL-2988...
tree
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commitdiff
2018-09-03
gmungoc
Merge branch 'trialMerge' into releases/Release_2_10_5_...
tree
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commitdiff
2018-09-03
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
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commitdiff
2018-09-03
gmungoc
JAL-3079 drop use of clip region while drawing wrapped...
tree
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commitdiff
2018-09-03
Jim Procter
Merge branch 'bug/JAL-3065_DH_keyPair_Exception' into...
tree
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commitdiff
2018-09-03
Jim Procter
JAL-3076 clarify javadoc handling single sequence respo...
bug/JAL-3076ensemblGeneId
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-31
gmungoc
Merge branch 'bug/JAL-3003epsWithSelection' into trialMerge
tree
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commitdiff
2018-08-30
Jim Procter
JAL-3092 make sure base pair counter is always moved...
tree
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commitdiff
2018-08-30
gmungoc
Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
tree
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commitdiff
2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
tree
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commitdiff
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