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JAL-3878 Move WSJob instantiation out of WebService classes.
[jalview.git]
/
src
/
2019-08-22
gmungoc
JAL-3121 slightly cleaner parsing of, and unit test...
tree
|
commitdiff
2019-08-22
gmungoc
Merge branch 'develop' into feature/JAL-3121gffAttributeMap
tree
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commitdiff
2019-08-22
gmungoc
JAL-3187 case-insensitive codon variant calculation
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
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commitdiff
2019-08-22
gmungoc
JAL-3187 one more obsolete method removed
tree
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commitdiff
2019-08-21
gmungoc
JAL-3187 minor code tidying, todo removal
tree
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commitdiff
2019-08-19
gmungoc
JAL-3412 calculateIdWidth - more consistency, constants...
tree
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commitdiff
2019-08-13
Jim Procter
JAL-3362 keep Java 1.8 build happy by specifying generi...
tree
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commitdiff
2019-08-13
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) trans...
tree
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commitdiff
2019-08-07
gmungoc
JAL-3187 (fudge) look in both alignments for stored...
feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-31
gmungoc
JAL-3389 add .py to restored Chimera session filename...
tree
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commitdiff
2019-07-31
gmungoc
Merge branch 'bug/JAL-3388structureChooserSorting'...
tree
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commitdiff
2019-07-30
gmungoc
JAL-3198 more efficient Sequence.getDisplayId()
tree
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commitdiff
2019-07-30
gmungoc
JAL-3388 correct class for column 0 Ref Sequence
bug/JAL-3388structureChooserSorting
tree
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commitdiff
2019-07-29
gmungoc
JAL-3386 correct wrapped width calculation for headless...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 add seq-annotations gap to cheight not to...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 Javadoc added for getWrappedHeight()
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 corrected wrapped widths height for IdCanvas
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 include seq-annotation spacing in getWrappedHe...
tree
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
tree
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
tree
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
tree
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
tree
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
tree
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commitdiff
2019-07-16
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-16
gmungoc
JAL-3144 better error message if no database selected
tree
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commitdiff
2019-07-16
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-07-16
gmungoc
JAL-2987 tolerate null double values when formatting...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 MCview now mc_view
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-15
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-07-12
Thomas
JAL-2629 can now choose number of jackhmmer iterations
merge/JAL-3285_mchmmer_with_211_develop
tree
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commitdiff
2019-07-12
Thomas
JAL-2629 fix faulty label in a MessageManager.getString...
tree
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commitdiff
2019-07-12
Thomas
JAL-2629 add sort by evalue and bit score
tree
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commitdiff
2019-07-12
Thomas
JAL-2629 hmmer searches now read domain rather than...
tree
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commitdiff
2019-07-11
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-07-11
Thomas
JAL-2629 hmmer searches include seqs past inclusion...
tree
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commitdiff
2019-07-11
Thomas
JAL-2629 hmm search UI and structural improvements...
tree
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commitdiff
2019-07-10
Jim Procter
JAL-3070 standard way of storing/recovering documentati...
tree
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commitdiff
2019-07-10
Jim Procter
JAL-3070 remove final reference to Jws2Instance
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-10
tva
JAL-2629 fix hmmsearch/jackhmmer assigning incorrect...
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
tree
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commitdiff
2019-07-10
tva
JAL-2629 fix hmsearch and jackhmmer not being able...
tree
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commitdiff
2019-07-10
tva
JAL-2629 hmmsearch # of new sequences now only displaye...
tree
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commitdiff
2019-07-10
tva
JAL-2629 fix incorrect hmmbuild on groups behaviour
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-07-10
tva
JAL-2629 fix hmmsearch/jackhmmer being unable to search...
tree
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
tree
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commitdiff
2019-07-05
tva
JAL-2629 uniquify all hmmer command sequence outputs
tree
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commitdiff
2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
tree
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commitdiff
2019-07-05
tva
JAL-2629 fix file format issues preventing hmmsearch...
tree
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
tree
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commitdiff
2019-07-03
tva
JAL-2629 fix search scores being read in incorrectly
tree
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commitdiff
2019-07-03
tva
JAL-2629 fix hmm on alignment being deleted upon runnin...
tree
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commitdiff
2019-07-03
tva
JAL-2629 evalues and bit scores now conserved after...
tree
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commitdiff
2019-07-03
tva
JAL-2629 removed empty line produced under sequence...
tree
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commitdiff
2019-07-03
tva
JAL-2629 can now filter by sequence e-value or bit...
tree
|
commitdiff
2019-07-02
Jim Procter
JAL-3111 JAL-3280 hide the version check preference...
tree
|
commitdiff
2019-07-02
Jim Procter
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-07-02
gmungoc
JAL-3071 restore correct if-else branches in startScrolling
tree
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commitdiff
2019-07-02
tva
JAL-2629 hmm match score colour scheme now colours...
tree
|
commitdiff
2019-07-02
tva
JAL-2629 add simple jackhmmer functionality
tree
|
commitdiff
2019-07-01
Ben Soares
JAL-3333 removed unused variable
tree
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commitdiff
2019-07-01
Ben Soares
JAL-3333 using floats for smoother weighting
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Sorry couldn't resist adding a bit of weightin...
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Title text now appears instantly. Altering...
tree
|
commitdiff
2019-06-28
Ben Soares
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 changed RGB model. Tested in mojave and Windo...
tree
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commitdiff
2019-06-28
tva
JAL-2629 add ability to add background frequencies...
tree
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commitdiff
2019-06-28
Jim Procter
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Smooth rotation of image now too
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 added height to rotating image preferred size
tree
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commitdiff
2019-06-28
tva
JAL-3336 add better method of determining where data...
tree
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commitdiff
2019-06-28
Jim Procter
JAL-3330 apply Ensembl feature settings when showing...
bug/JAL-3330_backpropagateEnsemblFeatureColours
tree
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commitdiff
2019-06-28
tva
JAL-3336 fix hmmsearch failing when parsing score table
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Replaced title text rendered in animated image...
tree
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commitdiff
2019-06-28
tva
JAL-2629 add file that should have been in previous...
tree
|
commitdiff
2019-06-28
tva
JAL-2629 add HMM Match Score colour scheme
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3334 fix - always load full SO to resolve the seque...
tree
|
commitdiff
2019-06-26
Jim Procter
JAL-3111 get rid of nasty tab characters
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 javadoc
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating view after fetch...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 dbreffetcher: record any feature display model...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating views when show...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
tree
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commitdiff
2019-06-19
Ben Soares
Merge branch 'merge/JAL-3310_and_JAL-3300' into develop
tree
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commitdiff
2019-06-19
Ben Soares
JAL-3321 Last pieces of the getdown-launcher.jar upgrad...
tree
|
commitdiff
2019-06-19
Jim Procter
Merge branch 'develop' into documentation/JAL-3111_rele...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3313 don't double count mapped codons
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-2830_editManglesDatasetSequence...
tree
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commitdiff
2019-06-18
Ben Soares
Merge branch 'develop' into merge/JAL-3310_and_JAL...
tree
|
commitdiff
2019-06-18
gmungoc
JAL-3187 javadoc
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-3286duplicatePdbQuery' into develop
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
tree
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commitdiff
2019-06-18
Ben Soares
JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...
tree
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commitdiff
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