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JAL-2759 Remove getVisibleBlocksIterator call
[jalview.git] / src /
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 remove dead code tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager tree | commitdiff
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe... tree | commitdiff
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop tree | commitdiff
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional... tree | commitdiff
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain tree | commitdiff
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of... tree | commitdiff
2017-10-16 kiramtJAL-2775 added repaint clipping tree | commitdiff
2017-10-13 kiramtJAL-2774 Created single event for update to both start... tree | commitdiff
2017-10-13 kiramtJAL-2759 hiddenColumns null check tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-10-12 kiramtJAL-2759 working first pass cursor tree | commitdiff
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds tree | commitdiff
2017-10-11 gmungocJAL-2225 updates for review comments, Checkstyle tree | commitdiff
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... tree | commitdiff
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery tree | commitdiff
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars tree | commitdiff
2017-10-11 kiramtJAL-2609attemptedmerge tidy tree | commitdiff
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... tree | commitdiff
2017-10-10 kiramtJAL-2690attemptedmerge seems to work tree | commitdiff
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate... tree | commitdiff
2017-10-10 Jim ProcterJAL-2392 formatting tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop tree | commitdiff
2017-10-10 kiramtJAL-2690attemptedmerge partial merge tree | commitdiff
2017-10-10 kiramtJAL-2759 Rearranged iterators tree | commitdiff
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. tree | commitdiff
2017-10-09 kiramtJAL-2674 iterator updates tree | commitdiff
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot tree | commitdiff
2017-10-06 kiramtJAL-2674 Last moves to iterators tree | commitdiff
2017-10-06 kiramtJAL-2647 stashing tree | commitdiff
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response tree | commitdiff
2017-10-05 kiramtJAL-2674 Removed a stray Vector tree | commitdiff
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting tree | commitdiff
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns tree | commitdiff
2017-10-04 gmungocJAL-2523 start of refactoring... tree | commitdiff
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 tidy tree | commitdiff
2017-10-03 kiramtJAL-2674 testing tree | commitdiff
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration tree | commitdiff
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing... tree | commitdiff
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology tree | commitdiff
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute... tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 kiramtJAL-2674 Tidies tree | commitdiff
2017-09-29 kiramtJAL-2674 finish with iterators for now tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy tree | commitdiff
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-28 kiramtJAL-2647 more iterators tree | commitdiff
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 tidied up CigarArray tree | commitdiff
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'... tree | commitdiff
2017-09-26 kiramtJAL-2742 fixed tree | commitdiff
2017-09-26 kiramtJAL-2674 Changed CigarArray constructor to use HiddenCo... tree | commitdiff
2017-09-26 kiramtJAL-2674 more List<int[]> -> HiddenColumns copy changes tree | commitdiff
2017-09-26 kiramtJAL-2674 Changes to pasting tree | commitdiff
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'... tree | commitdiff
2017-09-26 kiramtJAL-2740 removed unwanted code, added unit test tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench... tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2739'... tree | commitdiff
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3 tree | commitdiff
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions tree | commitdiff
2017-09-21 kiramtJAL-2674 Made gui ScalePanel reveal menus consistent... tree | commitdiff
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions tree | commitdiff
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence tree | commitdiff
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732... tree | commitdiff
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 javadoc tree | commitdiff
2017-09-15 Jim ProcterJAL-2733 redraw after changing the memory status displa... tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 JAL-1900 preserve the original DesktopManager... tree | commitdiff
2017-09-15 Jim ProcterJAL-1900 JAL-1625 back out OSX specific double buffer... tree | commitdiff
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