2005-11-18 |
amwaterhouse | Use PDB column format |
tree | commitdiff |
2005-11-18 |
amwaterhouse | Allow for 1 line BLC files |
tree | commitdiff |
2005-11-18 |
amwaterhouse | Parse name from last index of / |
tree | commitdiff |
2005-11-18 |
amwaterhouse | Use full name in dataset creation |
tree | commitdiff |
2005-11-18 |
amwaterhouse | Show error message outside thread loop |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Hidden tabs and vamsas refs for beta release |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Initial col is light gray |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Graphics must be set from nullFrame |
tree | commitdiff |
2005-11-17 |
amwaterhouse | No more isOverview |
tree | commitdiff |
2005-11-17 |
amwaterhouse | If overview is visible, update it |
tree | commitdiff |
2005-11-17 |
amwaterhouse | no more show translation |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Hide Tab settings for build |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Use setRGB rather than color, fillrect |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Move start and end before parsing name |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Hide vamsas settings for build |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Now outputs features and groups, and wrapped alignment... |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Optimized Overview |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Use stringbuffer, not string+ |
tree | commitdiff |
2005-11-17 |
amwaterhouse | Remove system.out |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Highlight doesnt use offset |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Don't initialise a char in findIndex |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Don't set chain colours in hashtable |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Highlight from alignment |
tree | commitdiff |
2005-11-16 |
amwaterhouse | No more myAtom, Highlight from alignment |
tree | commitdiff |
2005-11-16 |
amwaterhouse | no need for myAtom |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Parsing updates |
tree | commitdiff |
2005-11-16 |
amwaterhouse | Not used |
tree | commitdiff |
2005-11-15 |
amwaterhouse | No radio buttons in applet |
tree | commitdiff |
2005-11-15 |
amwaterhouse | Dont use this yet |
tree | commitdiff |
2005-11-15 |
amwaterhouse | Dont use myGraphics |
tree | commitdiff |
2005-11-15 |
amwaterhouse | Removed |
tree | commitdiff |
2005-11-15 |
amwaterhouse | Graphical bits moved into files to save jar size |
tree | commitdiff |
2005-11-15 |
amwaterhouse | Removed to reduce jar size |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Modifications for Applet PDB viewer |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Add getAlignment function |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Modifications for Applet PDB |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Fix bug where all chains are called A |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Applet PDB viewer |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Catch exceptions |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Use shortname |
tree | commitdiff |
2005-11-14 |
amwaterhouse | getShortName |
tree | commitdiff |
2005-11-14 |
amwaterhouse | findByShortName |
tree | commitdiff |
2005-11-14 |
amwaterhouse | Dont add sequence group at the moment |
tree | commitdiff |
2005-11-11 |
amwaterhouse | No new PDBViewer |
tree | commitdiff |
2005-11-11 |
amwaterhouse | Last chance, is the sequence without id? |
tree | commitdiff |
2005-11-11 |
amwaterhouse | SequenceFetcher new class |
tree | commitdiff |
2005-11-11 |
amwaterhouse | AddPdbEntry added |
tree | commitdiff |
2005-11-11 |
amwaterhouse | PNG and EPS in ImageMaker |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Allow featuresettings to be enabled on load |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Add mousewheel listener |
tree | commitdiff |
2005-11-10 |
amwaterhouse | REmove system.out |
tree | commitdiff |
2005-11-10 |
amwaterhouse | AlignSeq takes printstream as arg |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Add mapping details to stringbuffer |
tree | commitdiff |
2005-11-10 |
amwaterhouse | OnlyAddPDBEntries |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Set PDBViewer |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Use Antialiasing |
tree | commitdiff |
2005-11-10 |
amwaterhouse | PDB implementation updated |
tree | commitdiff |
2005-11-10 |
amwaterhouse | If selectionGroup is null, return |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Return accurate RGB for transparent residues |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Make cancelled public variable |
tree | commitdiff |
2005-11-10 |
amwaterhouse | getDbRef |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Get and set PDBEntrys |
tree | commitdiff |
2005-11-10 |
amwaterhouse | PDB is now PDBEntry |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Use StringBUffer instead of String |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Colour PDB by sequence |
tree | commitdiff |
2005-11-10 |
amwaterhouse | PDM mapping |
tree | commitdiff |
2005-11-10 |
amwaterhouse | Rot Canvas replaced with PDBViewer |
tree | commitdiff |
2005-11-08 |
amwaterhouse | Preliminary storeJalview |
tree | commitdiff |
2005-11-08 |
amwaterhouse | getVersion added for Castor mapping |
tree | commitdiff |
2005-11-04 |
amwaterhouse | Id parsing moved to Sequence |
tree | commitdiff |
2005-11-04 |
amwaterhouse | REmove system.out |
tree | commitdiff |
2005-11-04 |
amwaterhouse | Show full id |
tree | commitdiff |
2005-11-04 |
amwaterhouse | Display full id in trees |
tree | commitdiff |
2005-11-04 |
amwaterhouse | Use visible id for sorting |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Load and save Feature Colour Settings |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Java 1.5 bug note |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Allow residue prefix to dataset |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Only add first Id to suggestedIds |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Add jvsuffix and dbref to menu |
tree | commitdiff |
2005-11-02 |
amwaterhouse | 2CdbPrefix true by default |
tree | commitdiff |
2005-11-02 |
amwaterhouse | Output jvsuffix, dbref |
tree | commitdiff |
2005-11-01 |
amwaterhouse | Inform user about visual alignment, not dataset updates |
tree | commitdiff |
2005-11-01 |
amwaterhouse | Wrap long description in table |
tree | commitdiff |
2005-11-01 |
jprocter | dataset reference propagated to new MsaWS alignment. |
tree | commitdiff |
2005-11-01 |
jprocter | stores reference to dataset sequence if present |
tree | commitdiff |
2005-11-01 |
amwaterhouse | Label changes |
tree | commitdiff |
2005-11-01 |
amwaterhouse | Show JVSuffix |
tree | commitdiff |
2005-11-01 |
amwaterhouse | disulfide bond exceptions |
tree | commitdiff |
2005-11-01 |
jprocter | trivial change ("" to new String() in static method) |
tree | commitdiff |
2005-11-01 |
amwaterhouse | New schema, new objects |
tree | commitdiff |
2005-11-01 |
amwaterhouse | Adjust seq limits for visual and dataset sequences |
tree | commitdiff |
2005-10-31 |
amwaterhouse | dbPrefix and jvsuffix added |
tree | commitdiff |
2005-10-31 |
amwaterhouse | getDisplayId changed |
tree | commitdiff |
2005-10-31 |
amwaterhouse | jalviewClipboard added |
tree | commitdiff |
2005-10-31 |
amwaterhouse | Display only selected features |
tree | commitdiff |
2005-10-31 |
amwaterhouse | DBPrefix and JVSuffix added |
tree | commitdiff |
2005-10-31 |
amwaterhouse | FeatureRenderer doenst use groups |
tree | commitdiff |
2005-10-31 |
amwaterhouse | Sequence.getDatasetSequence().getFeatures |
tree | commitdiff |
2005-10-31 |
amwaterhouse | Use fontmetrics to tidy up display |
tree | commitdiff |
2005-10-31 |
amwaterhouse | Prompt before blasting |
tree | commitdiff |
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