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JAL-2574 renamed findFeatures as findOverlappingFeatures to minimise
[jalview.git]
/
src
/
2017-06-30
gmungoc
JAL-2574 renamed findFeatures as findOverlappingFeature...
bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into bug/JAL-2541cutWithFeatures
tree
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commitdiff
2017-06-28
gmungoc
Merge branch 'bug/JAL-2600resizeflicker' into develop
tree
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commitdiff
2017-06-28
kiramt
JAL-2600 Tidies
bug/JAL-2600resizeflicker
tree
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commitdiff
2017-06-28
kiramt
JAL-2600 updates following review
tree
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commitdiff
2017-06-28
gmungoc
JAL-2541 clean unit test of cut/undo (ungapped sequence)
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'features/JAL-2446NCList' into bug/JAL...
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Tidies
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Abandoned fastpaint for resize; now full repai...
tree
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commitdiff
2017-06-27
gmungoc
JAL-2602 check for null or empty description when copyi...
tree
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commitdiff
2017-06-27
gmungoc
JAL-1858 highlights on wrapped panel - work in progress
tree
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commitdiff
2017-06-27
gmungoc
JAL-147 scroll wrapped panel by one width's worth at...
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Add in IdCanvas and checks for 0 size images
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 vertical fast paint too
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 fast painting on resize
tree
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commitdiff
2017-06-26
kiramt
JAL-2600 reinstate original behaviour
tree
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commitdiff
2017-06-26
gmungoc
JAL-1858 ensure full redraw on 'remove all selections'
tree
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commitdiff
2017-06-24
gmungoc
JAL-2547 fix case of gap followed by enclosing contact...
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 null img when doing full repaint of wrapped...
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 don't fastpaint highlights if wrapped format
bug/JAL-1858fastPaintHighlights
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 refactored method to redraw previous/new highl...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 handle hidden columns when computing region...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 'fastPaint' of minimal region for highlights...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2480 simpler and safer test to avoid adding duplicates
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 tidy generic initialisations, SequenceFeatures...
tree
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commitdiff
2017-06-21
gmungoc
JAL-2541 save/Undo only 'diffs' for features with Cut...
tree
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commitdiff
2017-06-21
gmungoc
JAL-2451 remove unused flag
tree
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commitdiff
2017-06-21
gmungoc
JAL-2541 adjust end of contact feature spanning cut...
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 clarify that findOverlaps excludes spanning...
tree
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commitdiff
2017-06-21
gmungoc
JAL-2524 don't render up to a hidden marker beyond...
tree
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commitdiff
2017-06-20
gmungoc
JAL-2541 clearer comments
tree
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commitdiff
2017-06-20
gmungoc
JAL-2541 length check in deleteChars to avoid index...
tree
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commitdiff
2017-06-20
gmungoc
Merge branch 'features/JAL-2446NCList' into bug/JAL...
tree
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commitdiff
2017-06-20
gmungoc
JAL-2526 don't retain lastColumnPosition from an invali...
tree
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commitdiff
2017-06-20
gmungoc
JAL-2541 working Cut/Undo with feature relocation
tree
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commitdiff
2017-06-20
gmungoc
JAL-2526 better names for fields
tree
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commitdiff
2017-06-20
gmungoc
JAL-2480 make fiels of Range private
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-15
gmungoc
JAL-2541 revised cut with features (work in progress)
tree
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commitdiff
2017-06-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
bug/JAL-2591
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2589gapColour' into develop
tree
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
tree
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commitdiff
2017-06-13
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-12
gmungoc
JAL-2577 mirror select/hide by annotation in split...
tree
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commitdiff
2017-06-12
kiramt
JAL-2591 Updates following code review
tree
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commitdiff
2017-06-12
gmungoc
JAL-2577 mirror hide/select columns by annotation acros...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2589 render colour scheme gap colour in overview
bug/JAL-2589gapColour
tree
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commitdiff
2017-06-09
gmungoc
JAL-2594 avoid stack trace creating feature on gapped...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2480 tidy javadoc
tree
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commitdiff
2017-06-09
gmungoc
JAL-2593 avoid redundant rendering of co-located features
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 correct boundary conditions for sequence left...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
Merge branch 'bug/JAL-2586' into develop
tree
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commitdiff
2017-06-08
kiramt
JAL-2586 Clarification to URL link code
bug/JAL-2586
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 made redraw volatile
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 cache first/last residue column positions...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 setStatusMessage avoid redundant findPosition...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 reuse findIndex result if start==end
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
tree
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commitdiff
2017-06-07
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Overview changes ported to applet
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More rationalising of hiddencols
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
tree
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commitdiff
2017-06-06
kiramt
JAL-2591 Removed getHiddenRegions()==null checks which...
tree
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commitdiff
2017-06-06
kiramt
JAL-2591 Added readwrite locking on HiddenColumns
tree
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commitdiff
2017-06-06
gmungoc
JAL-2589 correct colour for Gap in Score and User Defin...
tree
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commitdiff
2017-06-06
gmungoc
JAL-2526 less stringent test for invalid cursor
tree
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commitdiff
2017-06-06
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2576'...
tree
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commitdiff
2017-06-05
Jim Procter
JAL-2590 patch for rendering eggnog trees with polytomi...
tree
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commitdiff
2017-06-05
Jim Procter
Merge branch 'bug/JAL-2576' into develop
tree
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commitdiff
2017-06-05
kiramt
JAL-2586 Checkstyle flagged fix of unintended fall...
tree
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commitdiff
2017-06-05
gmungoc
JAL-2505 comments updated
tree
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commitdiff
2017-06-05
gmungoc
JAL-2480 remove redundant method, further test coverage
tree
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commitdiff
2017-06-05
gmungoc
JAL-2505 explicit (and final) contactFeature property
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2526sequenceCursor' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
features/JAL-2526sequenceCursor
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 only hide/show columns intersecting with curre...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 use HiddenColumns.hideMarkedBits and take...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 bug fix - BitSet.set is [start,end+1)
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 ‘Hide Insertions’ now operates on selection...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2582 comment about IDs being lost if they resembl...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2582 recognise ENS…P peptide IDs and make two getPa...
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'bug/JAL-2578' into develop
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'bug/JAL-2577' into develop
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'features/JAL-2228_featureSetCounts_minRan...
tree
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commitdiff
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