git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
AMSA input set padgaps true
[jalview.git]
/
src
/
2007-05-02
amwaterhouse
AMSA input set padgaps true
tree
|
commitdiff
2007-05-02
amwaterhouse
convert space to gapchar
tree
|
commitdiff
2007-05-02
jprocter
undo stackempty error fix, refactored do and undo(...
tree
|
commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
tree
|
commitdiff
2007-05-02
jprocter
copy only the sequence associated alignment annotation...
tree
|
commitdiff
2007-05-02
jprocter
subsequence bound checks and constructor for selectivel...
tree
|
commitdiff
2007-05-02
jprocter
return flag indicating if annotations were actually...
tree
|
commitdiff
2007-05-02
jprocter
checks for negative start column in restrict
tree
|
commitdiff
2007-05-02
amwaterhouse
Padgaps is false by default
tree
|
commitdiff
2007-05-01
amwaterhouse
setVisible flag sent to EditNameDialog
tree
|
commitdiff
2007-05-01
amwaterhouse
Pad gaps method
tree
|
commitdiff
2007-05-01
amwaterhouse
Make sure annots are alignment width
tree
|
commitdiff
2007-05-01
amwaterhouse
use jalviewLite to addFrame
tree
|
commitdiff
2007-05-01
amwaterhouse
remove system.out
tree
|
commitdiff
2007-05-01
amwaterhouse
set chains available
tree
|
commitdiff
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
tree
|
commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
tree
|
commitdiff
2007-05-01
jprocter
javadoc
tree
|
commitdiff
2007-05-01
jprocter
removeAlignmentAnnotation only removes annotation objec...
tree
|
commitdiff
2007-05-01
jprocter
sort-by-score works of sequence-annotation, not alignme...
tree
|
commitdiff
2007-05-01
amwaterhouse
Save seqset properties
tree
|
commitdiff
2007-04-30
jprocter
'no sources selected' calls method on feature settings...
tree
|
commitdiff
2007-04-30
jprocter
fixed deadlock
tree
|
commitdiff
2007-04-30
amwaterhouse
setVisible replaces show
tree
|
commitdiff
2007-04-30
jprocter
rebuild sort by scores menu when new annotation is...
tree
|
commitdiff
2007-04-30
jprocter
pad should leave null annotations array null
tree
|
commitdiff
2007-04-30
jprocter
convenient creation of 'score only' annotation.
tree
|
commitdiff
2007-04-30
jprocter
parse alignment properties and add annotation rows...
tree
|
commitdiff
2007-04-30
jprocter
alignment properties and embedded newick strings can...
tree
|
commitdiff
2007-04-30
jprocter
dssp 7-state to three state lookup
tree
|
commitdiff
2007-04-30
jprocter
javadoc
tree
|
commitdiff
2007-04-27
amwaterhouse
remove excessive painting
tree
|
commitdiff
2007-04-27
amwaterhouse
REmove excessive painting
tree
|
commitdiff
2007-04-27
amwaterhouse
Repaint after feature added
tree
|
commitdiff
2007-04-27
amwaterhouse
Prevent err when editing and overview drawing
tree
|
commitdiff
2007-04-27
amwaterhouse
FeatureRenderer mixups fixed
tree
|
commitdiff
2007-04-27
amwaterhouse
Remove system.out AppletPDBViewer.java
tree
|
commitdiff
2007-04-27
amwaterhouse
Check pdbid size >0
tree
|
commitdiff
2007-04-27
amwaterhouse
Trouble with featureRenderers fixed
tree
|
commitdiff
2007-04-27
amwaterhouse
Move repaint in thread
tree
|
commitdiff
2007-04-27
amwaterhouse
Put alignmentProperties in scrollpane
tree
|
commitdiff
2007-04-27
amwaterhouse
Check feature group is visible for mouse over features
tree
|
commitdiff
2007-04-27
amwaterhouse
remove System.out
tree
|
commitdiff
2007-04-27
amwaterhouse
Add param to Jmol path
tree
|
commitdiff
2007-04-27
amwaterhouse
padGaps moved
tree
|
commitdiff
2007-04-27
amwaterhouse
Make sure mainContainer and owner are not null
tree
|
commitdiff
2007-04-27
amwaterhouse
Must check that featureGroup is visible for mouse over...
tree
|
commitdiff
2007-04-27
amwaterhouse
amendFeatures
tree
|
commitdiff
2007-04-27
amwaterhouse
paintAlignment(true)
tree
|
commitdiff
2007-04-27
amwaterhouse
Place new feature on top of existing features
tree
|
commitdiff
2007-04-27
amwaterhouse
Make sure sequence is in mouse over alignment
tree
|
commitdiff
2007-04-27
amwaterhouse
Amend Features
tree
|
commitdiff
2007-04-27
amwaterhouse
ColourByStructure not ready yet
tree
|
commitdiff
2007-04-27
jprocter
newlines in alignment properties converted to <br>
tree
|
commitdiff
2007-04-27
jprocter
blc header lines inserted as 'comment' alignment property
tree
|
commitdiff
2007-04-27
jprocter
parsers can generate alignment properties
tree
|
commitdiff
2007-04-27
jprocter
getProperties returns nullk for no properties
tree
|
commitdiff
2007-04-27
jprocter
documentation and getProperties method
tree
|
commitdiff
2007-04-27
amwaterhouse
aligned boxes
tree
|
commitdiff
2007-04-27
amwaterhouse
ThresholdIsMin available in applet
tree
|
commitdiff
2007-04-27
amwaterhouse
Set black if colour null
tree
|
commitdiff
2007-04-27
amwaterhouse
Alignment properties available
tree
|
commitdiff
2007-04-27
amwaterhouse
hide the initial window after selection made
tree
|
commitdiff
2007-04-27
amwaterhouse
one colour flag in annotation export
tree
|
commitdiff
2007-04-27
jprocter
bugfix for deleted annotation undo
tree
|
commitdiff
2007-04-27
amwaterhouse
Annotation gradient will use direct colours if no graph...
tree
|
commitdiff
2007-04-27
amwaterhouse
Allow threshold to be min/max
tree
|
commitdiff
2007-04-27
amwaterhouse
hide annotation colouring options
tree
|
commitdiff
2007-04-27
amwaterhouse
Dont colour labels
tree
|
commitdiff
2007-04-26
jprocter
added/tested sort by scores menu and added basic extrac...
tree
|
commitdiff
2007-04-26
jprocter
use hasScore method to test presence of score in annota...
tree
|
commitdiff
2007-04-26
jprocter
added 'sort by sequence associated annotation score'
tree
|
commitdiff
2007-04-26
jprocter
bug fixed basic score extraction by regex on descriptio...
tree
|
commitdiff
2007-04-26
jprocter
get annotation by label string
tree
|
commitdiff
2007-04-26
jprocter
fix '\0' bug from score-only positional annotation
tree
|
commitdiff
2007-04-26
jprocter
score is a double, fix bugs for score only annotation...
tree
|
commitdiff
2007-04-26
jprocter
double sort functions
tree
|
commitdiff
2007-04-26
jprocter
total annotation score is a double for maximum precision.
tree
|
commitdiff
2007-04-26
amwaterhouse
check for null ss character
tree
|
commitdiff
2007-04-26
amwaterhouse
colourText = false
tree
|
commitdiff
2007-04-26
jprocter
score and visible copy construction
tree
|
commitdiff
2007-04-26
amwaterhouse
Edit seqs
tree
|
commitdiff
2007-04-26
jprocter
quick fix for verbose fortranesque comments in preamble...
tree
|
commitdiff
2007-04-26
jprocter
fixed bug in prefix extraction for application
tree
|
commitdiff
2007-04-26
jprocter
basic methods for adding scores extracted from description
tree
|
commitdiff
2007-04-26
jprocter
fix for null annotations
tree
|
commitdiff
2007-04-26
jprocter
groovy support without compile-time dependency.
tree
|
commitdiff
2007-04-26
amwaterhouse
remove should be removeElement
tree
|
commitdiff
2007-04-26
amwaterhouse
Alignment Properties required for annotation file
tree
|
commitdiff
2007-04-25
jprocter
moving word methods to MapList and begin bug-fix for...
tree
|
commitdiff
2007-04-25
jprocter
getContentPane().add alignmentProperties popup.
tree
|
commitdiff
2007-04-25
amwaterhouse
properties + colours
tree
|
commitdiff
2007-04-25
amwaterhouse
Show scores
tree
|
commitdiff
2007-04-25
amwaterhouse
Export annotations with properties
tree
|
commitdiff
2007-04-25
amwaterhouse
View Properties
tree
|
commitdiff
2007-04-25
amwaterhouse
fix recent file type bug
tree
|
commitdiff
2007-04-25
amwaterhouse
alignmentProperties added
tree
|
commitdiff
2007-04-25
jprocter
Functions for parsing free text properties on sequences...
tree
|
commitdiff
2007-04-25
jprocter
transfer of residue numbering as alignment annotation
tree
|
commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
tree
|
commitdiff
next
git://source.jalview.org / jalview.git / history