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Merge branch 'features/JAL-1714_specify-mulitple-id_PDB-query' into Release_2_9_Branch
[jalview.git] / src /
2014-11-27 Jim ProcterJAL-674 unused variable tree | commitdiff
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if... tree | commitdiff
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views tree | commitdiff
2014-11-27 Jim Procterorganise imports tree | commitdiff
2014-11-27 Jim ProcterJAL-966 promote getName to an api method tree | commitdiff
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission... tree | commitdiff
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix tree | commitdiff
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation... tree | commitdiff
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation... tree | commitdiff
2014-11-27 Charles Ofoegbumodified regex for sequence validation tree | commitdiff
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context... tree | commitdiff
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence... tree | commitdiff
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop tree | commitdiff
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines... tree | commitdiff
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no descriptio... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotati... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line tree | commitdiff
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include... tree | commitdiff
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch... tree | commitdiff
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop tree | commitdiff
2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when... tree | commitdiff
2014-11-25 Jim Procterformatting tree | commitdiff
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by... tree | commitdiff
2014-11-25 Charles Ofoegbumerge commit tree | commitdiff
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export tree | commitdiff
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi... tree | commitdiff
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton... tree | commitdiff
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure... tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-23 Jim Procteremploy test and secondary structure character for deter... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA tree | commitdiff
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector tree | commitdiff
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow... tree | commitdiff
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... tree | commitdiff
2014-11-21 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... tree | commitdiff
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... tree | commitdiff
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and disti... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... tree | commitdiff
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structu... tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1583 MSA webservice validation tree | commitdiff
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> tree | commitdiff
2014-11-19 Charles Ofoegbumerge commit tree | commitdiff
2014-11-19 Charles OfoegbuJAL-207 pairwise alignment context patch tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output tree | commitdiff
2014-11-18 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-18 Charles OfoegbuJAL-998 tooltip wrapping tree | commitdiff
2014-11-18 gmungocJAL-1349 rebuild Web Service menu after add/delete... tree | commitdiff
2014-11-18 gmungocJAL-1582 removing finalize() as may have unexpected... tree | commitdiff
2014-11-18 Charles OfoegbuJAL-1583 MSA webservice client side validation tree | commitdiff
2014-11-18 gmungocJAL-1582 quicker tooltip on service presets (and code... tree | commitdiff
2014-11-18 gmungocJAL-1349 refresh menu presets after 'create' new tree | commitdiff
2014-11-18 gmungocJAL-1580 Chimera path tooltip, removed focusListener tree | commitdiff
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop tree | commitdiff
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into Release_2_... tree | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... tree | commitdiff
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java tree | commitdiff
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java tree | commitdiff
2014-11-17 gmungocJAL-1581 Tooltip slimmed down, Help button added on... tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 distinct calc IDs for JPredMSA and Jpred singl... tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 propagate results of JABA sequence based predi... tree | commitdiff
2014-11-17 Jim Procterimports and formatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 propagate JPred annotation from legacy jpred... tree | commitdiff
2014-11-17 Jim Procterformatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... tree | commitdiff
2014-11-17 Charles OfoegbuJAL-1043 patch to show warning dialog when webservice... tree | commitdiff
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... tree | commitdiff
2014-11-17 gmungocJAL-1586 chimera file chooser added, validate on OK... tree | commitdiff
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into develop tree | commitdiff
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... tree | commitdiff
2014-11-17 Charles Ofoegbuupdated documentation tree | commitdiff
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282 tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-17 gmungocJAL-1580 size parameters dialog to height of Desktop tree | commitdiff
2014-11-17 Charles OfoegbuJAL-1570 patch to enable adding a webservice which... tree | commitdiff
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