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JAL-4059 Updates to SwingJS and JmolJS
[jalview.git]
/
src
/
2024-04-02
Ben Soares
Merge branch 'bug/JAL-4375_annotation_not_redrawn_corre...
tree
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commitdiff
2024-04-02
Ben Soares
JAL-4380 Improved annotation tooltips especially second...
bug/JAL-4375_annotation_not_redrawn_correctly_when_scrolling_left-right_via_trackpad_in_wrap_mode
tree
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commitdiff
2024-03-20
Ben Soares
Merge branch 'bug/JAL-4375_annotation_not_redrawn_corre...
tree
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commitdiff
2024-02-26
Ben Soares
JAL-4381 Plausibly better division of line segment...
tree
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commitdiff
2024-02-23
Ben Soares
JAL-4381 For lineGraph line segments that should be...
tree
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commitdiff
2024-02-21
Ben Soares
JAL-4375 JAL-4381 Removal of AnnotationColouring and...
tree
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commitdiff
2024-02-20
Ben Soares
JAL-4380 Added information to annotation tooltips when...
improvement/JAL-4381_dynamic_value_colouring_of_annotations
tree
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commitdiff
2024-02-20
Ben Soares
JAL-4375 Add an AnnotationColouringI interface, and...
tree
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commitdiff
2024-02-07
Ben Soares
JAL-4375 Pass through a flag to AnnotationRenderer...
tree
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commitdiff
2024-02-07
Ben Soares
JAL-4375 This extra clip isn't necessary
tree
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commitdiff
2024-02-07
Ben Soares
JAL-4375 Clipped label text in annotations to annotatio...
tree
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commitdiff
2024-02-02
Ben Soares
JAL-4375 I don't think turning off antialiasing is...
tree
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commitdiff
2024-02-02
Ben Soares
JAL-4375 Single width pixel artifacts appearing for...
tree
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commitdiff
2024-02-01
Ben Soares
JAL-4375 fix typo in property name
tree
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commitdiff
2024-02-01
Ben Soares
JAL-4375 Improved trackpad user experience for wrapped...
tree
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commitdiff
2024-01-31
Ben Soares
JAL-4375 More consistent calculation for dashed thresho...
tree
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commitdiff
2024-01-31
Ben Soares
JAL-4375 Different way of getting mouse wheel movement...
tree
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commitdiff
2024-01-31
Ben Soares
JAL-4375 Fix big sideways scroll from trackpad at begin...
tree
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commitdiff
2024-01-31
Ben Soares
JAL-4375 Fixed sensitivity of new more responsive left...
tree
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commitdiff
2024-01-31
Ben Soares
JAL-4375 Fixed the following when trackpad side-scrolli...
tree
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commitdiff
2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2024-01-23
James Procter
Merge branch 'develop' into bug/JAL-4290_headless_align...
tree
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commitdiff
2024-01-23
Ben Soares
JAL-4367 Limit right and top adjustments
tree
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commitdiff
2024-01-23
Ben Soares
JAL-4290 Fix image comparison between gui and headless...
tree
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commitdiff
2024-01-23
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2024-01-23
Ben Soares
Merge branch 'bug/JAL-4235_gradle_task_jalviewjsTranspi...
tree
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commitdiff
2024-01-23
James Procter
JAL-4369 invokeAndWait to avoid hang whilst calling...
tree
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commitdiff
2024-01-23
James Procter
JAL-4369 uniprotkb - try to avoid another redirect...
tree
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commitdiff
2024-01-23
James Procter
JAL-4369 use rest.uniprot.org as fetch domain
tree
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commitdiff
2024-01-23
James Procter
Merge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
tree
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commitdiff
2024-01-19
Ben Soares
JAL-4373 Setting the jvmmempc and jvmmemmax strings...
bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
tree
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commitdiff
2024-01-05
Ben Soares
JAL-4368 Only set a colour scheme if --colour is given...
bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
tree
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commitdiff
2023-12-20
Ben Soares
JAL-4238 Marked where JalviewJS is hanging on 3DBeacons...
tree
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commitdiff
2023-12-20
Ben Soares
JAL-4059 Added some more Platform.addJ2SDirectDatabaseC...
tree
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commitdiff
2023-12-19
Ben Soares
JAL-4290 Fixed one test
tree
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commitdiff
2023-12-18
Ben Soares
JAL-4290 incorrect usage of main()
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4290 Add method to allow for specific settings...
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4290 Set structureSelectionManager settings more...
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4059 Only run this once
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4059 Use namespaced query parameters in preference...
tree
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commitdiff
2023-12-15
Ben Soares
JAL-4290 Move some annotation visibility settings to...
tree
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commitdiff
2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-2934proportionalScr...
bug/JAL-2934proportionalScrolling
tree
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commitdiff
2023-12-14
Ben Soares
JAL-4059 Improvement to launch indicator
tree
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commitdiff
2023-12-12
James Procter
JAL-4217 don’t try and export an image when Jmol is...
tree
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commitdiff
2023-12-12
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-12
James Procter
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
tree
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commitdiff
2023-12-12
James Procter
JAL-4217 close internal frame on the swing thread to...
tree
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commitdiff
2023-12-12
Ben Soares
JAL-4353 helper method and test for primary/secondary...
tree
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commitdiff
2023-12-12
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 re-used random color code
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 Preserve the user given 'linkedId' with ArgVal...
tree
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commitdiff
2023-12-06
James Procter
Merge branch 'patch/JAL-840_clustalx_docs_fix' into...
tree
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commitdiff
2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
tree
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commitdiff
2023-12-06
Ben Soares
JAL-4353 Add a 'random' colour to produce a random...
tree
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commitdiff
2023-12-05
Ben Soares
JAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
tree
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commitdiff
2023-12-04
Ben Soares
JAL-4059 Attempts to set JalviewJS desktop geometry...
tree
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commitdiff
2023-11-30
James Procter
JAL-4342 test and patch checking annotation csv export...
patch/JAL-4342_emptyannotationsexport
tree
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commitdiff
2023-11-30
James Procter
Patch fixes JAL-4165 - added to release notes JAL-4351
tree
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commitdiff
2023-11-30
Ben Soares
Merge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
tree
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commitdiff
2023-11-30
Ben Soares
JAL-4344 careful application of -Djava.awt.headless...
tree
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commitdiff
2023-11-29
Ben Soares
Merge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv...
tree
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commitdiff
2023-11-29
Ben Soares
JAL-4344 Some fixes of waiting blocks, and headless...
tree
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commitdiff
2023-11-27
Ben Soares
JAL-4238 minor errors fixed for JalviewJS structure...
tree
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commitdiff
2023-11-24
Ben Soares
JAL-4059 Allow form-created querystring style values...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 Storing important thisApplet information in...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 Made jalview.bin.JalviewJS to use new command...
tree
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commitdiff
2023-11-23
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-11-23
Ben Soares
JAL-4059 rename vars to j2s_ this and that for clarity
tree
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commitdiff
2023-11-22
Ben Soares
JAL-4059 Send bespoke Info hash parameters into jalview...
tree
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commitdiff
2023-11-22
James Procter
Merge branch 'patch/JAL-4345_pae_epas1_doubleclick...
tree
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commitdiff
2023-11-21
James Procter
JAL-4345 patch and release notes
patch/JAL-4345_pae_epas1_doubleclick
tree
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commitdiff
2023-11-21
Ben Soares
JAL-4238 an attempt to set JalviewJS desktop overflow...
tree
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commitdiff
2023-11-21
Ben Soares
JAL-4238 Changing visibility of locateInRange(int)...
tree
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commitdiff
2023-11-20
Ben Soares
JAL-4348 Add newer versions of Chimera and ChimeraX...
tree
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commitdiff
2023-11-20
James Procter
JAL-4343 patch for JAL-4347 uniprot non-pos feature...
tree
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commitdiff
2023-11-16
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
tree
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commitdiff
2023-11-16
Ben Soares
JAL-4238 ignore thread.sleeps in jalviewjs. Added a...
tree
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commitdiff
2023-11-15
James Procter
Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
tree
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commitdiff
2023-11-15
James Procter
Merge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
tree
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commitdiff
2023-11-15
James Procter
JAL-4273 actually pass startSeq etc on to rendering...
tree
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commitdiff
2023-11-15
James Procter
JAL-4222 bail if we wait too long for Jmol to save...
patch/JAL-4222_100s_timeout_on_imagexport
tree
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commitdiff
2023-11-15
James Procter
JAL-4090 blocker patch JAL-3772 tidy up groovy console...
tree
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commitdiff
2023-11-15
James Procter
JAL-4090 JAL-4334 position status when start, end or...
bug/JAL-4334_unknownstartenduniprotfeatures
tree
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commitdiff
2023-11-15
Ben Soares
JAL-3836 Allow .ext.gz files to be recognised in the...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
Ben Soares
JAL-4059 fixed a test that is now working as expected...
tree
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commitdiff
2023-11-13
Ben Soares
JAL-4059 Fix the tooltip formatting for when, e.g....
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
tree
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commitdiff
2023-11-13
Ben Soares
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
JAL-4236 don’t look for headers in JalviewJS
tree
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commitdiff
2023-11-13
James Procter
JAL-4336 set preferred dimensions for JTextBox workarou...
tree
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commitdiff
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 fix JAL-4236 - just put the name of the class...
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