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Merge branch 'develop' into features/JAL-2446NCList
[jalview.git] / src /
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... tree | commitdiff
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test tree | commitdiff
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent tree | commitdiff
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... tree | commitdiff
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 simplify code tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout tree | commitdiff
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-05-02 gmungocJAL-2499 inlined two 1-line methods tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 bug fix tree | commitdiff
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 use constant for preference token tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-27 gmungocJAL-2480 don't allow null type in SequenceFeature tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection tree | commitdiff
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature... tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 kiramtJAL-2388 Missed file from previous commit tree | commitdiff
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes tree | commitdiff
2017-04-25 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles tree | commitdiff
2017-04-25 kiramtJAL-2388 And corrected OverviewCanvas for applet tree | commitdiff
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions... tree | commitdiff
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 bug fix tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs tree | commitdiff
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped... tree | commitdiff
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text tree | commitdiff
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header... tree | commitdiff
2017-04-21 kiramtJAL-2388 Tidies tree | commitdiff
2017-04-21 kiramtJAL-2388 Make sure resizing still works tree | commitdiff
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators tree | commitdiff
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning... tree | commitdiff
2017-04-19 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-19 gmungocJAL-2435 mirror font changes with middle mouse drag tree | commitdiff
2017-04-19 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and... tree | commitdiff
2017-04-19 tcofoegbuJAL-2482 added null check tree | commitdiff
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types... tree | commitdiff
2017-04-18 tcofoegbuJAL-2482 Bugfix tree | commitdiff
2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature tree | commitdiff
2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc tree | commitdiff
2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api tree | commitdiff
2017-04-17 gmungocJAL-2446 comment updates tree | commitdiff
2017-04-17 gmungocJAL-2446 promote Range from test to src to replace... tree | commitdiff
2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in Featu... tree | commitdiff
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