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JAL-3878 update branch from 2.12 merge from 2.11.2
[jalview.git] / src /
2023-01-30 Jim ProcterJAL-3878 update branch from 2.12 merge from 2.11.2 development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged tree | commitdiff
2023-01-30 Jim ProcterMerge branch 'JAL-3878_ws-overhaul-3' into with_ws_over... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api tree | commitdiff
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop tree | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 formatting tree | commitdiff
2023-01-06 Jim ProcterMerge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha... tree | commitdiff
2022-12-16 Jim ProcterJAL-4109 examine -Djalview.loglevel on startup to decid... tree | commitdiff
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE tree | commitdiff
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... tree | commitdiff
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl... tree | commitdiff
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... tree | commitdiff
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure tree | commitdiff
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... tree | commitdiff
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 moved a comment block tree | commitdiff
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... tree | commitdiff
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... tree | commitdiff
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... tree | commitdiff
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... tree | commitdiff
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS tree | commitdiff
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag tree | commitdiff
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... tree | commitdiff
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 class formatting tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 class reformatting tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 store distances as doubles tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added tree | commitdiff
2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for... JAL-3878_ws-overhaul-3 tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into task/JAL-3991_check_actual_... tree | commitdiff
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... tree | commitdiff
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode tree | commitdiff
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka. tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task tree | commitdiff
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